Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1285 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTTATCCTCAACAATGGCATCCATTGCTGGAGAACGGTTCCCAAACTAGCAGGTCTTCTAAGATGTGGAAAGAGTTGCAGACTTAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACTGAAATGGAAGAGGATCAACTAATAGAACTACATTCGCGTCTCGGTAATAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGAACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAACTGCTTGGAATGGATCCTTTGACCCACGAGCCAATTGAGCAAAAGGTTCACACTGATGATGAGGGCGCAAATAAGACCAATCCACAACACCCTTCTATTATTTTAGGAGGGTCTGAAGAAAATAATGTGGAGATTAATAAATCCTTGGAAAGTAGTGATGATGGCACCAAAGGAATGGCAAAAACAGAAGGGAAAAGAGAAGAAAACTACAAGGTGACTAGTGATAATTGGGATGATACCTCTGATGAACTTTTATACAATTTTGAAATGCTATGTTCTCAGTTGGATTTGGGATCATGGATGAGCCAAGAAATTACCAATAATATCACTAGTACTAATTCGTTATGTAGTTCATCTCTCTCTAATATGGATGACACTAGCCACCTCTCTATGGATGAATCCTCTTACATACATCAGGAAAACTCCTTGCAGCAATGGGTTGATAGCATGGATTCCATTCTCTCATGCGATGATGGCTTCAATATTCCTCTTGATCAAGGCATTTTCTTCTCGGAAAATAGGGAATAA 879 0.4005 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQLIELHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGMDPLTHEPIEQKVHTDDEGANKTNPQHPSIILGGSEENNVEINKSLESSDDGTKGMAKTEGKREENYKVTSDNWDDTSDELLYNFEMLCSQLDLGSWMSQEITNNITSTNSLCSSSLSNMDDTSHLSMDESSYIHQENSLQQWVDSMDSILSCDDGFNIPLDQGIFFSENRE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1285 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed9g1285 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed9g1285 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed9g1285 292 CDD SANT 16 61 IPR001005 -
Aed9g1285 292 PANTHER MYB DOMAIN PROTEIN 40 2 268 - -
Aed9g1285 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed9g1285 292 Gene3D - 68 144 - -
Aed9g1285 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed9g1285 292 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Aed9g1285 292 MobiDBLite consensus disorder prediction 135 154 - -
Aed9g1285 292 CDD SANT 70 110 IPR001005 -
Aed9g1285 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed9g1285 292 SMART sant 13 63 IPR001005 -
Aed9g1285 292 SMART sant 66 114 IPR001005 -
Aed9g1285 292 MobiDBLite consensus disorder prediction 165 186 - -
Aed9g1285 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 268 - -
Aed9g1285 292 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1285 Aed-Chr9 10556733 10557931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1285 1 147 MYB Transcription Factor Family AT5G16600 71.622 2.26e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g1285 Myb_DNA-binding 9.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1285 K09422 - gmx:100783231 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1285 9 10556733 10557931 Aed9g1285 9 10556733 10557931 ECH