Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1274 ATGGAGAACAAAAGAATGGTGGCAGCAACGATGAATGAAGAACAGAAACTCAGCCCCAGAAACCAGAAGATCCTCCCATTAGCAGATTCCAATGGCCAAAACATGGCGACCCTTTTCAGCCCAAGGTTCAAATCCGCGGCTGCTATGGCTGGTTGGGATGAAGAGGCACTCTTATTGGCGAGTCTCGTCAGGAGTCCACAAGCACCAATCCCTGTAGCTATTCTTGATCTTGATGCAGAAGAAATTCCAACCAAAAAAGATAGTGGGAGAAAGAAGAAAGAAAAGAAAGCTTGTGTTGATAATGAGGGAAGTAAAGAATCCACAGAGAAGAAGAAGCTTGGTGGTGATGCCCCTTCTTCTAGTTCTGCTCTTCCCTGCATTGATAAACTGAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAAAAAATGCCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAGTTAATAAGCAATGGACGATCATGCACTGTGAACACAGTTCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAGTTGAAGCAAGAAAAGCAACTAGTGCCTTGAAGGGTTGCCAACAAGTTCAAATTCTTAGTCCAGAATCAGCATTTTTCGCTAACCTTAGGAATAGCACACAACCTTCAAGCAGAGGCACGAATACAAGGAGGAGCGGAACAACAACAACAACACAGGAGGATGAAGATGCTGCATTGGCTAGAACGTTGCAGAGAGAAATTGATGAGCAAAGTCACGGACCAACTCGAACTCGGATTGCAAGGTTGAGTGCAAGAAGAAGAGGAGTTTCTACTAGCCAACATGAAGATGCAGCTTTGGCTCTAAGGATGCAGAGAGAAGAGTTCATGCAAACTTATAATAGAGGGAGCAGCAACCAGGAACAGTCTAAGAGGCTACCTTCATCATCATTGGCTAGAGAAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCATCGCATCGGTGACAACAGAAGAAGGTCTTAG 1068 0.4513 MENKRMVAATMNEEQKLSPRNQKILPLADSNGQNMATLFSPRFKSAAAMAGWDEEALLLASLVRSPQAPIPVAILDLDAEEIPTKKDSGRKKKEKKACVDNEGSKESTEKKKLGGDAPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKATSALKGCQQVQILSPESAFFANLRNSTQPSSRGTNTRRSGTTTTTQEDEDAALARTLQREIDEQSHGPTRTRIARLSARRRGVSTSQHEDAALALRMQREEFMQTYNRGSSNQEQSKRLPSSSLARENLRAMASRAMNHRIGDNRRRS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1274 355 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Aed9g1274 355 SUPERFAMILY RING/U-box 128 199 - -
Aed9g1274 355 PANTHER UNCHARACTERIZED 35 351 - -
Aed9g1274 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 205 IPR013083 -
Aed9g1274 355 ProSiteProfiles Zinc finger RING-type profile. 136 175 IPR001841 -
Aed9g1274 355 MobiDBLite consensus disorder prediction 85 122 - -
Aed9g1274 355 PANTHER OS12G0267900 PROTEIN 35 351 - -
Aed9g1274 355 SMART ring_2 136 174 IPR001841 -
Aed9g1274 355 MobiDBLite consensus disorder prediction 231 257 - -
Aed9g1274 355 MobiDBLite consensus disorder prediction 269 296 - -
Aed9g1274 355 Pfam Zinc finger, C3HC4 type (RING finger) 136 174 IPR018957 GO:0046872
Aed9g1274 355 MobiDBLite consensus disorder prediction 1 22 - -
Aed9g1274 355 MobiDBLite consensus disorder prediction 85 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1274 116 190 RAD5 or RAD16-like Gene Family AT5G43530 35.802 1.32e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1274 - - gmx:102666585 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1274 9 10364090 10366326 Aed9g1274 9 10364090 10366326 ECH