Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1262 GCAAGGAGGAAGTGTGACAACGAGTGCATCTTTGTACCTCTCTTTGCTTCAAAAGAGAGCTCGACACAGTTTGCAGAAGTGCACAGGGTTTTTGGAAGGAGCAATTTGTCAAACTTATTGACAAATGTTGAAGAGGTTCGTTGCCAGGAGGTGGCATCATTGCAAGGAGAACTTTATAGTATGCAGGTTGAGCTGATAAATACAAAGTTTTTATATTTAGATATTCCTAAGAGAACACAACAACAACAACCAAACATTGATGTAGCTATGCATGTAGAATACTCCATCAATGCACCAACTGATTCCAGCAACTTGATGAACATGAGCTCTTTCGTTCTTGGTTTTGATGACCCTGCAACAAAGACATCATTTTTGCTTGTTTTGTCGAATAAATGA 396 0.3914 ARRKCDNECIFVPLFASKESSTQFAEVHRVFGRSNLSNLLTNVEEVRCQEVASLQGELYSMQVELINTKFLYLDIPKRTQQQQPNIDVAMHVEYSINAPTDSSNLMNMSSFVLGFDDPATKTSFLLVLSNK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1262 131 ProSiteProfiles LOB domain profile. 1 97 IPR004883 -
Aed9g1262 131 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 2 49 - -
Aed9g1262 131 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 49 - -
Aed9g1262 131 PANTHER LOB DOMAIN CONTAINING PROTEIN 49 103 - -
Aed9g1262 131 Pfam Lateral organ boundaries (LOB) domain 2 51 IPR004883 -
Aed9g1262 131 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 49 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1262 Aed-Chr9 10117566 10118443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1262 2 65 AS2 family AT2G42430 44.615 2.65e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed9g1262 LOB 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1262 - K13945 pvu:PHAVU_001G115200g 95.9005