Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1256 ATGGATTTCGCACAGAGCAAGCAAGTGTTGGCCATCATAGGCACAATAACACACAACGAAGCAGCTATGGCAAGTGGACTTAGTGACACTACAAAGAACATTCCTATCTTGTCTCTAATTTCACCAGCAGCCATATCAGAGAAATTATCTCCTCCATTGCCATACTTCATCCAAGTGGGAGATGATATCAACCTTCACATGCAATGCATTGCAGCCATTGTAGGAGAATTCAAATGGAGAAAGGTGACAATAATCTATGAACTTAATAACTGGTTTTCCTCTGATCCAGGGATGCTACTTGACCTCACCTATGCTCTTAGAGCCGTTGGTTCTGAGATTGAAAATCATTTAGCTTTGCCTTCATTGTCCTCTCTATCAGACCCAAAATCTATCATTGAAAATGGGCTTAATAGGCTCAAAAACAAGAGCAACAGGGTCTTCTTGATTGTAGACTCCTCTTTAGAAATGGCTAATATACTCTTTGAGAAAGCAAAACAAATGGGTTTGATGGAAAAAGGTTCTGTGTGGGTTATCCCAGATAGGGTTGCTGGCCTTCTTGATTCGCTTAACTCTTCTTCAAAACTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCATGGAAACAAGTGAGGCATTTAGAAGGTTCAAATTCAAGTTTCAAAGAAGGTTTGCATTGGAGTTCCCTGAAGAAGAGAGCTTCAACCCAAGTATCTTTGCACTTCGATCATTTGACACAACTCGGGCTATTGCTCAGGCTGCAAATGAATCACAAGGAAGATTCAGCCTCGAAGAATTCTCAAAGAGGGTTATGTCAAATACAATTTATTGGCCTGGAGGCTTAAAGTCTGTTCCTAATGGATGGACTGAGGAAAGGTCATTGAAAATAGGAGTGCCTGCACAAGCTGCCTTTACTCAGTTTGTGAATAAATTGGATGGTGCTGTTGGAGATACATCAATATTGGCAGATAGATACCATTTAGTTGACTTCTCACAACCATATATTGAATCCGGGCTTGACATGGTGGTTTTTCCCAAGGGTTCCACTTTGGCAACAGACATATCTGAGGCATTGCTGAAATCTGATACTGCTGAGCCCCATTTGAGAGCTTGTGGTCTTGAACGAGAGGATGTCCTGCGTGGCGTTTGGTTCGTTGAAGGCCTGAATGTATACTCTCGGGTCGAAAACTAA 1194 0.4154 MDFAQSKQVLAIIGTITHNEAAMASGLSDTTKNIPILSLISPAAISEKLSPPLPYFIQVGDDINLHMQCIAAIVGEFKWRKVTIIYELNNWFSSDPGMLLDLTYALRAVGSEIENHLALPSLSSLSDPKSIIENGLNRLKNKSNRVFLIVDSSLEMANILFEKAKQMGLMEKGSVWVIPDRVAGLLDSLNSSSKLNMQGVIGFKTHFMETSEAFRRFKFKFQRRFALEFPEEESFNPSIFALRSFDTTRAIAQAANESQGRFSLEEFSKRVMSNTIYWPGGLKSVPNGWTEERSLKIGVPAQAAFTQFVNKLDGAVGDTSILADRYHLVDFSQPYIESGLDMVVFPKGSTLATDISEALLKSDTAEPHLRACGLEREDVLRGVWFVEGLNVYSRVEN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1256 397 PANTHER GLUTAMATE RECEPTOR 271 310 - -
Aed9g1256 397 Gene3D - 301 366 - -
Aed9g1256 397 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 273 - -
Aed9g1256 397 Gene3D - 64 299 - -
Aed9g1256 397 Pfam Receptor family ligand binding region 2 259 IPR001828 -
Aed9g1256 397 PANTHER GLUTAMATE RECEPTOR 309 345 - -
Aed9g1256 397 PANTHER GLUTAMATE RECEPTOR 2 273 - -
Aed9g1256 397 SUPERFAMILY Periplasmic binding protein-like II 285 352 - -
Aed9g1256 397 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 309 345 - -
Aed9g1256 397 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 271 310 - -
Aed9g1256 397 SUPERFAMILY Periplasmic binding protein-like I 2 288 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1256 Aed-Chr9 10010367 10023092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1256 1 258 Ion Channels AT2G29120 32.046 3.08e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1256 - - gmx:100778941 449.514