LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1255	ATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACTAATGGGAAAGCATCAAAAGATAGCCATGCAAATTGCACTCCAAGAGTTTAATAGATTGAGTAATTGTTCCAAGCTGGATTTGAAGATAAGAAATTCCCATGGGAATTCAGCTCAAGCAATTGCTAGTGCTATGGAACTCACACAGAGCAAGCAGATGCTAGCCCTCATAGGAACAATAACCCACAACGAAGCAACTTTGGCAAGTGAATTTAATGACACCATAAAGAACATTCCTGTATTGTCTCTAACTTCTCCTACAACCAACACAAAGTTATTATCTCCAAAATTGCCACACTTCATCCAAATTGGCGATGATATCAAGATTCACATGCAATGCATTGCAACCATTGTAAGAGAATTCAGATGGAGAAAAGTGACAGCAATATATGAACTTAATACTGGATTTTCCTATGATGCATGGATGCTAATTGACCTCTCCGATTCTCTTAGGCTTGTTGGTTCTGAGATTGATAATCACTTAGCTTTTCCTTCCTTGCCCTCTCTATCTGACCCAAAATTCACCATTGAAAATGAGCTTAATAGGCTCAAAAACAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGCTAGCTAACATACTTTTGGAGAAAGCAAAACAAATGGGTTTGATGGAAAAAGGTTCCGTGTGGGTTATCCCAAATGCAGTTGCTGGCCTTCTTGATTCAGTTAACTCGTCTGTTATCCGTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCATGGAAACAAGTGAGGCATTTGGAAGGTTCAAACTCAAATTTCAAAGGAAGTTTGCATCAAAGTTCCCTAAAGAAGAGAACATTAACCCAAGTTTCTTTGCACTTCAATCATATGAAGCAACATGGGCTGTTGCTAAGGCTGCAAATGAATCACAAGGGGAATTCACCCTCCAAAAATTATTCAAAAACATCATCTCTAGGAATGAAAAACTATGGCAATCACAAGCCTTTGATGTAATAAATGTGATAGGCAAAAGTTACAGAGAGTTGGCATTATGGTCTCCATCACTAGGTCTCTTCAAAAACCTCGTTACGCAACAAGTGACTGAGATGAACACACGCAGTGCTTCTAGTATAGTTTTCAGTACAGTTTATTGGCCTGGAGGTACACAATTTGTTCCTAAGGGATGGAATCACAGCACCAAAGAGAGGACATTGCAAATAGGAGTGCCTGCAAAAGGAGCATTTACTGAATTTGTGCATGTGGCATATGACAAGAATAGGAATAAAACTTCCATCACCGGATTTTCAATCAATGTCTTTAAAGCAGTCGTTGATAATTTGCCTTATGACTTGGAATTCACGTTTACATTGGATGCTGCTGTTGGAGATATAGCAATAATGGGATACAGATATCATTTAGTCGACTTCTCACAACCTTATGTTGAATCTGACCTCAACATGGTGGTCACAGAGCAATTGGTAAAATCAAAAGAAACATGGATTTTCTTGGATGCCTTTACAAAAGAGATGTGGTTGGTTATGACTGCATTGCACATTTTTGTGGGATTTGTCATATGGTTAATAGAACGCCAAGTTAATGCAGAATTAGAGGGATTGGGGTCCATGCTTTGGTTTTTAGTCAGCGTAATATTCTATGCACACAGAGAACCAATAAAAAGCCCCTTGGCTAGAACTGTGCTGGCACCATGGTTATTTGTGATCCTAATTGCAACTAGTACTTTCACGGCAAGTTTGACTTCCAGGATGACTATTTCGCAGTTAGAGCCATCTGTGTTAGATATCCAGACCCTTCAAAAAAGAAATTCCCCAGTTGGTTGCAATGGAAATTCGTTCATTGTGAAGTATTTGATCGACGTACTAAAATTCAAGCCTGAGAATATCAAGAAAATTAACTCCATAAGTGATTACCCTGATGCCTTTCAGAACAAGGCTATTGAAGCCGCTTTCTTTGTTGCCCCTCATGCTAAAGTCTTTCTGGCAAAATACTCATGCAAAGGCCTCATCAAAGCAGGGGACACTTTCAAGCTTGGTGGCTTTGGTTTTGTATTTCCCAAGGGTTCCACTTTGGCTACCGACATATCCGAGGCATTGGTGAAAGTGATAGAAAGTGGAGAAACGGAACAACTAGAAAAAGACATGCTATCAATAGGAGGCAATGCCACTTGTTCTCCTTTAGAGAGCAAGGTAAAAGATGGGTCATCGACTGGATTACAACCTTTCCTTGGCATATTTTGCATCTGTTCAAGTGTTGCTATTCTGGCATTGTTATATACTACAATTTATTTGCTCATAAATAATGTAGAGACCTTAACTAGCTACATAAATGCAACATTAACACAATTAAGGAGAATATGGAGATTAATCATCACATAA	2403	0.3899	MSIGAVLDLSSLMGKHQKIAMQIALQEFNRLSNCSKLDLKIRNSHGNSAQAIASAMELTQSKQMLALIGTITHNEATLASEFNDTIKNIPVLSLTSPTTNTKLLSPKLPHFIQIGDDIKIHMQCIATIVREFRWRKVTAIYELNTGFSYDAWMLIDLSDSLRLVGSEIDNHLAFPSLPSLSDPKFTIENELNRLKNKSNRVFLIVHSSLELANILLEKAKQMGLMEKGSVWVIPNAVAGLLDSVNSSVIRNMQGVIGFKTHFMETSEAFGRFKLKFQRKFASKFPKEENINPSFFALQSYEATWAVAKAANESQGEFTLQKLFKNIISRNEKLWQSQAFDVINVIGKSYRELALWSPSLGLFKNLVTQQVTEMNTRSASSIVFSTVYWPGGTQFVPKGWNHSTKERTLQIGVPAKGAFTEFVHVAYDKNRNKTSITGFSINVFKAVVDNLPYDLEFTFTLDAAVGDIAIMGYRYHLVDFSQPYVESDLNMVVTEQLVKSKETWIFLDAFTKEMWLVMTALHIFVGFVIWLIERQVNAELEGLGSMLWFLVSVIFYAHREPIKSPLARTVLAPWLFVILIATSTFTASLTSRMTISQLEPSVLDIQTLQKRNSPVGCNGNSFIVKYLIDVLKFKPENIKKINSISDYPDAFQNKAIEAAFFVAPHAKVFLAKYSCKGLIKAGDTFKLGGFGFVFPKGSTLATDISEALVKVIESGETEQLEKDMLSIGGNATCSPLESKVKDGSSTGLQPFLGIFCICSSVAILALLYTTIYLLINNVETLTSYINATLTQLRRIWRLIIT	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g1255	800	CDD	GluR_Plant	406	724	-	-
	Aed9g1255	800	Gene3D	-	295	408	-	-
	Aed9g1255	800	SUPERFAMILY	Periplasmic binding protein-like II	381	721	-	-
	Aed9g1255	800	Gene3D	-	118	293	-	-
	Aed9g1255	800	SMART	GluR_14	407	726	IPR001320	GO:0015276\|GO:0016020
	Aed9g1255	800	Pfam	Bacterial extracellular solute-binding proteins, family 3	432	721	IPR001638	-
	Aed9g1255	800	PIRSF	IGluLR_plant	456	796	IPR017103	-
	Aed9g1255	800	PIRSF	IGluLR_plant	315	460	IPR017103	-
	Aed9g1255	800	PIRSF	IGluLR_plant	1	333	IPR017103	-
	Aed9g1255	800	Gene3D	-	409	502	-	-
	Aed9g1255	800	Gene3D	-	1	116	-	-
	Aed9g1255	800	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	2	784	-	-
	Aed9g1255	800	Pfam	Receptor family ligand binding region	18	314	IPR001828	-
	Aed9g1255	800	PANTHER	GLUTAMATE RECEPTOR	2	784	-	-
	Aed9g1255	800	Pfam	Ligand-gated ion channel	722	757	IPR001320	GO:0015276\|GO:0016020
	Aed9g1255	800	SUPERFAMILY	Periplasmic binding protein-like I	3	399	IPR028082	-
	Aed9g1255	800	Gene3D	-	503	639	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g1255	Aed-Chr9	9996314	10007924	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1255	1	780	Ion Channels	AT2G29120	30.404	4.52e-109	354

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1255	-		-	gmx:100778941	1243.8