Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1218 ATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAAACTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACTTGGTTATGCAACGCTACCATATTACCGGACGGGACGATTATAAAAAGTATCATGCAGAATTCATGATTTTTATATTTTCTGATGCTATATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATAGTGAAACAAATGGACTCAAAGGATCCTTTTCGGATTGATATGACTGATAAGCTTCTGGAAAAACTCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTGTGCGAACGTTTAACCGTGTCATCCTTTTGTAGGCGCAGGCTCTCAACTGTTTTGGTGCGGCTAAAATTTGCAGAGCACTTGAAAGAAGCTGTGACATACATTGAGCAAGGGCATATAAGAGTTGGTCCAGATACAGTTACAGACCCAGCTTTTCTTGTAACTAGAAACATGGAAGACTTCATTACATGGGTGGATTCATCCAAAATAAAAAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTGA 591 0.3875 MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYHAEFMIFIFSDAIYSGLCHMVQKLVNIVKQMDSKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPDTVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1218 196 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 195 - -
Aed9g1218 196 Gene3D - 121 196 IPR036986 GO:0003723
Aed9g1218 196 SMART s4_6 121 184 IPR002942 GO:0003723
Aed9g1218 196 Pfam S4 domain 121 167 IPR002942 GO:0003723
Aed9g1218 196 SUPERFAMILY Alpha-L RNA-binding motif 74 189 - -
Aed9g1218 196 Pfam Ribosomal protein S4/S9 N-terminal domain 3 119 IPR001912 GO:0019843
Aed9g1218 196 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 195 IPR022801 -
Aed9g1218 196 ProSiteProfiles S4 RNA-binding domain profile. 121 187 - -
Aed9g1218 196 CDD S4 121 189 - -
Aed9g1218 196 SMART Ribosomal_S4_2 3 120 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1218 Aed-Chr9 9491945 9494722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1218 77 162 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 34.483 6.58e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1218 K14560 - gmx:100782389 349.747