LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1213	ATGGGAGAGGATTCTAGGGAGTTTGGAGAAAGCACAAGAAAAATCAATAACCACAAGATGGAAGAGGTTGAAAGAGAAGAAGATGGAATAGACACAGAAAGCAATCCATTGAATGAGCCACTGCTGCTTAAGAGGAACCCGACACTGTCCTCCAACCCTCTTGCTCTGTGTGTGACTGCTGAATGGGACAGGTACTTGCCGGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGGATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAGTTGGAAGCATTGGAGCTGTCTCTGCTGGCCTAGATTTGGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGATCAGATGGCGCTGGCTTCGATATTTTAACAATGACCGTGACCGTCGGGATCTTATCACCTGTGGTGCATCTTCGGGAGTTTGTGCAGCTTTCCGGTCTCCAGTTGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCGACTTGGTGGAGAAGTGCTCTCTTATGGAGAACATTTTTCAGCACTGCGGTGGTGGTGGTGGTGCTTAGGGCCTTCATTGAAATCTGCCATTCTGGGAAATGTGGCCTTTTTGGTGAAGGAGGATTGATCATGTTCGATGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATCGTCCTTGTTGTAGTCATTGGAATAATAGGTGGGGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAAAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTTTCACTCTTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGGAAATTGCACCCCATGTGATCCATCGCTTCCAGAGTCAGCCTGCCCCACCAATGGACGGTCTGGAAATTTCAAACAATTCAACTGCCCATCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACCAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAGCCCTTGTCCCTCGTAATTTTCTTTGTACTCTATTGTGTATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATTCTTATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTCCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTACGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCGAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCGGTGGTTACCATCAATGGAGTAGAAAAGGTAGCCAAAATAGTAGATGTCTTGAAAAACACCACACATAATGCTTTCCCTGTTATGGACAATGGGGTAGTACCACCAGTAGTAGGGCAGGCCAATGGGGCAGCAACAGAACTGCATGGACTGATTCTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCAGTAATTGGGATCTTGACTAGGCAAGATCTGCTGGCCCACAACATTCTGACAGTCTTTCCTCAGCTGGCAAAATCTAAGAGTAGAGAAAAGAGGAATTGA	2169	0.4523	MGEDSREFGESTRKINNHKMEEVEREEDGIDTESNPLNEPLLLKRNPTLSSNPLALCVTAEWDRYLPGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIVGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIRWRWLRYFNNDRDRRDLITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVSLFTSMCQYGLPFLGNCTPCDPSLPESACPTNGRSGNFKQFNCPSGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFVLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTINGVEKVAKIVDVLKNTTHNAFPVMDNGVVPPVVGQANGAATELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPQLAKSKSREKRN	722

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed9g1213	722	MobiDBLite	consensus disorder prediction	1	25	-	-
Aed9g1213	722	Pfam	CBS domain	651	701	IPR000644	-
Aed9g1213	722	PANTHER	CHLORIDE CHANNEL PROTEIN	63	717	-	-
Aed9g1213	722	MobiDBLite	consensus disorder prediction	1	37	-	-
Aed9g1213	722	Gene3D	-	517	708	IPR046342	-
Aed9g1213	722	PRINTS	Plant CLC chloride channel signature	240	247	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Aed9g1213	722	PRINTS	Plant CLC chloride channel signature	208	216	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Aed9g1213	722	PRINTS	Plant CLC chloride channel signature	222	232	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Aed9g1213	722	PRINTS	Plant CLC chloride channel signature	365	381	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Aed9g1213	722	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	63	717	-	-
Aed9g1213	722	PRINTS	Chloride channel signature	501	515	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	92	109	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	187	206	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	445	461	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	123	142	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	413	433	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	PRINTS	Chloride channel signature	463	482	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	SUPERFAMILY	Clc chloride channel	63	516	IPR014743	-
Aed9g1213	722	CDD	CBS_pair_voltage-gated_CLC_euk_bac	534	703	-	-
Aed9g1213	722	SUPERFAMILY	CBS-domain pair	518	702	IPR046342	-
Aed9g1213	722	Pfam	Voltage gated chloride channel	80	494	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed9g1213	722	CDD	ClC_6_like	63	514	-	-
Aed9g1213	722	SMART	cbs_1	536	597	IPR000644	-
Aed9g1213	722	SMART	cbs_1	652	705	IPR000644	-
Aed9g1213	722	Gene3D	Clc chloride channel	50	516	-	-
Aed9g1213	722	ProSiteProfiles	CBS domain profile.	649	715	IPR000644	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g1213	Aed-Chr9	9452649	9456750	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1213	63	716	Ion Channels	AT3G27170	81.193	0.0	1080

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1213	K05016		-	gmx:100788620	1230.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed9g1213	9	9452649	9456750	Aed9g1213	9	9452649	9456750	ECH
	Aed9g1213	9	9452649	9456750	Aed3g1239	3	11002112	11007028	PCT