Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1184 ATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCAGAACAATGAAGCAGCAGCAGTGGCAGCTTCAGTGGATTTGAGACTTGGTGAGGAAAAATCAGCCCCAGATGCTTCTAAGGAAACAAGAGACTCAAGAACCGTGTCATCTCCATCCGGGTCATCGAAAAGATCGCGCCTTCAGAATGGATCACAGAACAACAACAACAACAGCAACATGTGTTGTTCTGTTGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAATGCACTCCAAAACCCCGGTTGTGTTGGTAGGGGGGAAACAGCAAAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCCGGAGGAAACCTCAGCCACCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCCAGAATCCTACACTTTGGTAGCCCTGAGGCATATGCCAACCCTCTTATGAGAAACATGTGGCCTGCCACTCCCAAAACTGGAACTGAATCTGGCTATGATCCTCCCCGACTTCTATACCGAATTGACAAGCATAAGCAAGATAAGGGACATCCTCTTTGGCAAGAGAACGACCCAAAAGTAGGCAATGGCAACAAAGAAATGCCTGGAACTCCAATTTGTCAGCCTATCCATGGCACGATTGCCCCATCAGTGGGTGGAAAGAGCAGCCGAAAGCTCTCCTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTATGATGCAATCTAGCATCACCTGCCCAATGCAGTCTCCATCAGGATCTGTGCATTTCGATGCTACGAATGAGTATGCATGCTCAGAAACGGAAAAAGATAAGCCTAGTGGTGGTCAAGTTTTGGTTTTTGATGCAAACTCAACCAACCTCCATTACAATGGAATGCTGCAAATGGGGCTTGATGGATTGGTTGAAAATGAGGACCCACTAACACTTCCCTTCTTGTGGGAGTAG 1110 0.4739 MDWDGKEFAWDPRGLEQNNEAAAVAASVDLRLGEEKSAPDASKETRDSRTVSSPSGSSKRSRLQNGSQNNNNNSNMCCSVDGCNSDLSDCREYHRRHRVCEMHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPEAYANPLMRNMWPATPKTGTESGYDPPRLLYRIDKHKQDKGHPLWQENDPKVGNGNKEMPGTPICQPIHGTIAPSVGGKSSRKLSSDAKPGSFDSGCALYLLSTLQSQSPELSMMQSSITCPMQSPSGSVHFDATNEYACSETEKDKPSGGQVLVFDANSTNLHYNGMLQMGLDGLVENEDPLTLPFLWE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1184 369 MobiDBLite consensus disorder prediction 33 47 - -
Aed9g1184 369 MobiDBLite consensus disorder prediction 28 71 - -
Aed9g1184 369 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Aed9g1184 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 369 IPR044817 GO:0003677
Aed9g1184 369 SUPERFAMILY SBT domain 76 157 IPR036893 GO:0003677|GO:0005634
Aed9g1184 369 MobiDBLite consensus disorder prediction 48 71 - -
Aed9g1184 369 Pfam SBP domain 78 151 IPR004333 GO:0003677
Aed9g1184 369 Gene3D - 68 139 IPR036893 GO:0003677|GO:0005634
Aed9g1184 369 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 7 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1184 Aed-Chr9 9068585 9072945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1184 1 176 SBP-box Gene Family AT5G50670 42.786 7.05e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed9g1184 SBP 9.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1184 - - gmx:100798317 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1184 9 9068585 9072945 Aed9g1184 9 9068585 9072945 ECH