Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1118 ATGCAGATTAATATTCAGGTGGAGGGAGGGCACATGTTCTCTCTTGCAATTGATCCCTCCGAAACAATCTTCGATCTCAAAAAGAAGGTGGAAAGCTCACAGAAGATTCCAGTTGCGCGCCAAATCACCATCTTCCATGGCGAATATCTCGAGGACAGTTTCATCGTTTCGGAATGTCATATCAATCACGGAGCGTGCATTGTCCTCCGACTTAGAGCCACTCATGCGCCACCGCCGGTGCGTGACTTAAACTTGTCTCCGCCGGGGTATGACTTAAACCTGACGCCTTCACAGCAACCGAAACCGCAGCCAACTCTTCCGAGCAGCAGCAAAGAATACGATCCGTCGGCCGGCACTTCGAAATCGTCGAAGTTTAAACCAAGTCCGTTGGAGGAAGAGTCAGAGGAGCTGCAAGTGCCAAAGAACTGGAAAGAGCGTATCGTTTACGAAGCGGAGTTGGAGAACAACGTTCTGAAGCTAAAGTCAAAGATTCATACAAGAATTCTTCCAGGCTTCAAGAGGCAAGGTGTGCCAGTGGAGAGGATAATGGTGCGCAGGCATGCATCGCATGAGGAACTTCTTGACGATCGGGTAATTCGAGAATGTGCGGAACTTATTTCAAAGATTGATCCTGATATCAACGTGTCCCTCAAGGAACCGCCTGATCTTGCAGTGGCGAGGAAGCTGAAGGTGAAGGTGTTGCCGGTACAGAGCAAAGAGGCGATAGAGATAGAGGTCAATCGTAATGATTTGGTGTCGGTGCTGAGGAAGGAGCTGGAGAAGTTGCAATTGACGCATAGCTTTCGTCTTCCCGCAAATGATGCTTATTACTTCTTTCACAATCTCAAGCGTCTGATTGAAAATGAGTCCTTTCAGAAGCAACATGTCAAGGAAGGTGATATCATCCGAACCCTACAACTCGGGGAAGGTGACCCTATCCAAATTAATTAG 951 0.4805 MQINIQVEGGHMFSLAIDPSETIFDLKKKVESSQKIPVARQITIFHGEYLEDSFIVSECHINHGACIVLRLRATHAPPPVRDLNLSPPGYDLNLTPSQQPKPQPTLPSSSKEYDPSAGTSKSSKFKPSPLEEESEELQVPKNWKERIVYEAELENNVLKLKSKIHTRILPGFKRQGVPVERIMVRRHASHEELLDDRVIRECAELISKIDPDINVSLKEPPDLAVARKLKVKVLPVQSKEAIEIEVNRNDLVSVLRKELEKLQLTHSFRLPANDAYYFFHNLKRLIENESFQKQHVKEGDIIRTLQLGEGDPIQIN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1118 316 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Aed9g1118 316 CDD Ubl_ubiquitin_like 3 70 - -
Aed9g1118 316 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 305 - -
Aed9g1118 316 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Aed9g1118 316 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Aed9g1118 316 SMART ubq_7 1 72 IPR000626 GO:0005515
Aed9g1118 316 MobiDBLite consensus disorder prediction 90 125 - -
Aed9g1118 316 Gene3D - 1 74 - -
Aed9g1118 316 MobiDBLite consensus disorder prediction 80 137 - -
Aed9g1118 316 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1118 Aed-Chr9 8306380 8307330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1118 1 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.707 4.02e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1118 - - gmx:102667153 145.591