Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1115 ATGATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCTTCACAAACCCGAGGCCTGTGCTTTCGTGGCAGGTGTTGGTCCGGAGCATTCCCTTGTCACCGTGCAAGGGAACAACAACAACGCTTCTCAATCTCGCGGGTCGGGTCGGATCCACCACCACCACCGCCAAAACCACCACCACAACCACCATGGTCTTGTTGCTGCTGTCACCACCACCTTCGGAACCGTTCATCGGAAGAAAAGAATGGCCAGACAAAGAAGATCCACTAACCCAACTCCGTTGATCAACCATCTCAACAACCATAAGCCTCTTCCTTCTCCGACGGCTGCATCCTCCTCGCACGTGCCACTCTCCTCCGCAACTCTCCCGCCCACACGTGAAATCGATCATAGAAGGTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTACCTTCCAGCCCTTGAATCAAAAGAAGGATTTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAACAGCCGGATGTATGTACTTGAAAATACAGGAGACTTTGTCAAGACACATGGCCTACGCTTTGGAGATTCCATTGTGATTTACCAAGATAGTGAAAACAACAATTATGTTATTCAGGCGAAAAAGGCTTCTGATCAGGAGGATGAATTTATGGAAGAAACTAGTGATACAATGAATGTGAATGATATCTACCTTAATGATTATGAGGTGAGCAAACCTGGTTGCTTCAATATAAGCTATCCTGCAGTGAACGATACAGGAATGTCATTCATATATGAGACTACCTTCTCAAATGATTCCCCACTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTAA 984 0.4492 MMMDQRQREKLLLHKPEACAFVAGVGPEHSLVTVQGNNNNASQSRGSGRIHHHHRQNHHHNHHGLVAAVTTTFGTVHRKKRMARQRRSTNPTPLINHLNNHKPLPSPTAASSSHVPLSSATLPPTREIDHRRLRFLFQKELKNSDVSSLRRMILPKKAAEAYLPALESKEGFVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVKTHGLRFGDSIVIYQDSENNNYVIQAKKASDQEDEFMEETSDTMNVNDIYLNDYEVSKPGCFNISYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1115 327 SUPERFAMILY DNA-binding pseudobarrel domain 135 234 IPR015300 -
Aed9g1115 327 CDD B3_DNA 135 237 IPR003340 GO:0003677
Aed9g1115 327 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Aed9g1115 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 327 IPR044800 GO:0003700
Aed9g1115 327 Pfam B3 DNA binding domain 137 235 IPR003340 GO:0003677
Aed9g1115 327 MobiDBLite consensus disorder prediction 47 61 - -
Aed9g1115 327 Gene3D - 133 253 IPR015300 -
Aed9g1115 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 38 327 - -
Aed9g1115 327 MobiDBLite consensus disorder prediction 38 61 - -
Aed9g1115 327 MobiDBLite consensus disorder prediction 78 123 - -
Aed9g1115 327 SMART B3_2 137 239 IPR003340 GO:0003677
Aed9g1115 327 MobiDBLite consensus disorder prediction 87 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1115 Aed-Chr9 8271763 8275785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1115 50 327 B3 DNA Binding Superfamily AT3G26790 50.809 1.61e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed9g1115 B3 4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1115 - - gmx:100783961 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1115 9 8271763 8275785 Aed9g1115 9 8271763 8275785 ECH