Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1074 GTTCTTCAAAATGATGTTGATTTGCTAAATCCTCCGGTTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGTACCTCAGATGTTTGCCCAATCCGATGTTAAGTGCCAGGGTTGTTTCAACATAACCACTGTCTTTAGCCACTCTCAGACTGTCGTTGTATGCGGAAACTGCCAAACAGTCTTGTGCCAACCGACAGGCGGCCGTGCAAGGCTAACCGAGGGATGCTCCTTTAGGAAGAAGGGAGACTAA 282 0.4716 VLQNDVDLLNPPVELEKRKHKLKRLVQSPNSFFMVPQMFAQSDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1074 93 PANTHER 40S RIBOSOMAL PROTEIN S27 1 92 IPR000592 GO:0003735|GO:0005840|GO:0006412
Aed9g1074 93 Pfam Ribosomal protein S27 43 91 IPR000592 GO:0003735|GO:0005840|GO:0006412
Aed9g1074 93 SUPERFAMILY Zn-binding ribosomal proteins 43 91 IPR011332 GO:0006412
Aed9g1074 93 ProSitePatterns Ribosomal protein S27e signature. 45 77 IPR000592 GO:0003735|GO:0005840|GO:0006412
Aed9g1074 93 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 1 92 - -
Aed9g1074 93 Gene3D - 2 92 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1074 Aed-Chr9 7917201 7918879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1074 1 93 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 84.946 4.96e-55 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1074 K02978 - twl:119990722 168.318