Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1033 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGAGCAGGTTTTTCCCTCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAATGGCTTTCAGAGTTTGTTGAAGACTGTTTCTCAAGCCCCCAAAGCTGTGTCTTGGTACCCGTTGGTGGTGTTAAGACAACAACAAGCACAGGCACAAGCACCAACCCTTTGAAAAGACCACCCCATCAAAAAAATGAGTCTCCTTTGCAAAATCTTGCAGTGCCAGGGAAGGCAAGGAGCAAAAGGAAGAGACTTTCAGCTCCAAGAACTACCAAAGACCCTCTAAGCCTATGGTCACACCATTTGAACCCTCAAAATGAGGCCTTGAGTTCTGACCCTCCTCTTCTCAAACAGGCTTATTGGCTAGCTGACAGTGAACTCATCATGCCAAAGCCAAAGGAGGAGAAAGAGATTGTGAATGTGGTGATGAGCAAAGAGAGCATTGAGGAGTCAGAGATTGATTCAGATAGCAGCAATGGTCAACAAGGAATGATGATGGCTAGAAGGTGCACACATTGCTTGGCACAAAGGACCCCACAGTGGAGGGCAGGGCCATTAGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCACACAAGAAAGTCATGGAGATGAGGATGGCTGTTGTTTACTCTTCTTCCATTTCTAGTGACCAGTAG 813 0.4649 MNMDMCQNVSVSGECQQEQVFPSSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPQSCVLVPVGGVKTTTSTGTSTNPLKRPPHQKNESPLQNLAVPGKARSKRKRLSAPRTTKDPLSLWSHHLNPQNEALSSDPPLLKQAYWLADSELIMPKPKEEKEIVNVVMSKESIEESEIDSDSSNGQQGMMMARRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVVYSSSISSDQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1033 270 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Aed9g1033 270 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
Aed9g1033 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 253 - -
Aed9g1033 270 ProSiteProfiles GATA-type zinc finger domain profile. 189 225 IPR000679 GO:0006355|GO:0043565
Aed9g1033 270 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 268 - -
Aed9g1033 270 Pfam GATA zinc finger 195 229 IPR000679 GO:0006355|GO:0043565
Aed9g1033 270 MobiDBLite consensus disorder prediction 72 95 - -
Aed9g1033 270 MobiDBLite consensus disorder prediction 72 124 - -
Aed9g1033 270 Gene3D - 186 257 IPR013088 GO:0006355|GO:0008270
Aed9g1033 270 SMART GATA_3 189 243 IPR000679 GO:0006355|GO:0043565
Aed9g1033 270 PANTHER GATA TRANSCRIPTION FACTOR 3 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1033 Aed-Chr9 7462320 7463927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1033 42 257 C2C2-Gata Transcription Factor Family AT4G32890 44.545 2.15e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed9g1033 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1033 - - gmx:100786479 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1033 9 7462320 7463927 Aed7g0858 7 6499547 6500934 PCT