Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0982 ATGGCTTCAACAAGCGGAGCAGCGAACTCGTCGAACCCGCCGCAGCAGCAGCAACAAATTCACAGCTCCCGGAGCCACCAGAACATCGACTCCATGAGCAAAGCCATGGCGCAGTACACGGAGGACGCACGGCTCCACGCGGTGTTCGAGCAGTCCGGCGAGTCAGGAAAGTCCTTCGACTACTCCCAATCAATCCGCATAACCTCGGAGACCGTGCCGGAGCAGCAGATAACGGCTTATCTTCTGAAAATCCAGCGCGGCGGGTTCATCCAGCCGTTCGGCTCCATGATCGCCGTGGACGAGCGGTCCTTCCGAATCATGGCGTACTCCGACAACGCCCGCGACATGCTCGGCATTATTCCGCAGTCTGTCCCCTCCATGGACGACGACGACAAGCTCCACGCCTTCGGTCTCGGCACCGACGTCAGAACACTCTTCACTCACTCGAGCGGTGTCCTCCTCGAGAAGGCTTTCTCCGCGCGCGAAATCAGCCTCATGAACCCTATCTGGATCCACTCCAGAATCTCCGGTAGGCCTTTCTACGGCATCTTCCACCGAGTCGACGTCGGAATCGTCATCGATTTGGAGCCCGCGCGGACGGAGGATCCTGCGCTCTCCATCGCCGGAGCCGTCCAGTCTCAGAAGCTCGCCGTCCGCGCGATTTCGAAGCTCCAGTCTCTCCCCGGCGGCGATGTCAAGCTTCTCTGCGACACTGTTGTGGAGAGTGTTAGGGAATTGACAGGCTACGATAGGGTTATGGTTTATAAATTTCACGAGGATGAGCATGGGGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGTTTGCATTATCCCGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTTGATTGTCATGCTTCTTCTGTTAGGGTCATGCAGGATGAGGCTCTTCTGCAGCCTCTCTGCTTGGTTGGCTCCACTCTCAGGGCTCCTCACGGCTGCCATGCTCAGTACATGGCCAACATGGGATCGATTGCGTCGTTGGTCATGGCTGTTATTATCAATGGGAATGATGAGGACAGCATTGGCTCCCGCAGTTCGATGAGGCTCTGGGGGCTTGTTGTTTGCCACCATACCTCTGCTAGATGTATTCCCTTTCCCTTGAGGTATGCTTGTGAGTTTCTGATGCAGGCCTTTGGGCTGCAGCTGAACATGGAGCTTCAGCTGGCCGTGCAGTCAATGGAGAAGCGGGTTTTGAGGACTCAGACTCTGCTGTGTGATATGCTTCTTAGGGACTCTCCTACTGGCATTGTTACTCAGAGTCCTAGTATTATGAACTTGGTGAAGTGTGATGGGGCTGCTCTTTATTACCGAGGGAACTATTGTCCCTTGGGTGTCACTCCAACTGAGGCTCAGATAAGGGATATTATTGAGTGGCTGTTGGCTTTTCATGGAGATTCCACCGGTTTGAGTACTGATAGTCTAGCTGATGCTGGATATCCGGGAGCTGCCTTGCTCGGGGATGCAGTTTGCGGGATGGCGGTTGCTTATATTACAGAGAAGGATTTTCTCTTCTGGTTTAGGTCTCACACGGGAAAGGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGACAAAGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCGTTTTTGGAAGTGGTGAAAAGCCGTAGCATGCCGTGGGAGAATGCAGAGATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCGTTTAAAGATGCTGAGCATAGAGATTCCAAGGTTGTGGTTCCCTGTGTGCCGGAGCTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTTGCCAGAGAGATGGTCAGATTGATTGAAACAGCCACTGCTCCTATATTTGCTGTTGATGTTGATGGCCACATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCGCAGTGGAGGAGGCTATGGGGAAGTCCTTGATTCGCGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGACAGGCTTCTTTCTCGTGCTTTAAAAGGTCAAGAAGATAGGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGACTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATTCAAGGCGACTACAAGGCTATTGTACATAGTCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGACGATAACACATGTTGCTTAGAGTGGAACACTGCAATGGAAAAGCTTACTGGTTGGGGCCGTTCAGATGTCATTGGCAAAATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATGACAAAGTTTATGATTGTCTTACACAATGCACTTGGTGGACAAGAGACAGATAAATTCCCTTTTTCATTTCTTGATCGCCATGGAAAGTATATACAAACTTTCCTGACTGCAAATAAGAGGATTAACATGAATGGCCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGCACAAAGACAACAAGAGAAGAATTCCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAATAAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGATACAGGCTTGACCGACGAGCAAAAGCAGTTTCTTGAGACTAGTTCTGCTTGTGAGAAGCAAATGTCAAAGATAATACATGACATTGATCTTGAAAGCATTGAGGACAGGTCCCTGGAGCTTGAAAAGGGGGAATTTTTGCTTGGAAATGTCATAAACGCAGTTGTTAGCCAAGTAATGTTACTGTTGAGAGAAAGAAAGTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGCGATCAATTGAGGATTCAACAAGTGCTGTCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTAAATCCAAGAATAAAACAAATCTCAGATGGGCTTACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAGGACATGCTCAATAACAATTACGCTCTCACTCATCACCTAACAAGGCAACTTAAGGGACAAGCATTTGAATTTGAACAATCTAATTTGGCTAGCTATCCCAGTCATACTTTCATAGTAGAGGAAATGCGACTTGTTCATGGCCAAGTGGAGTCTCCTGTGAAAATTTTCAAGCAAATGCTTTACATCATTAGCAGCTGCAGTGAACTCCAATCTATAGTTGGATTGAACTGCATCCATCCATTTCCTGCACTGTTGTCTGTTCTGATAGTAACTGCTTATACCAAATGA 3510 0.4721 MASTSGAANSSNPPQQQQQIHSSRSHQNIDSMSKAMAQYTEDARLHAVFEQSGESGKSFDYSQSIRITSETVPEQQITAYLLKIQRGGFIQPFGSMIAVDERSFRIMAYSDNARDMLGIIPQSVPSMDDDDKLHAFGLGTDVRTLFTHSSGVLLEKAFSAREISLMNPIWIHSRISGRPFYGIFHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASSVRVMQDEALLQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEDSIGSRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSMEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMNLVKCDGAALYYRGNYCPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITEKDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMPWENAEMDAIHSLQLILRDSFKDAEHRDSKVVVPCVPELELQGVDELSSVAREMVRLIETATAPIFAVDVDGHINGWNAKVSELTGLAVEEAMGKSLIRDLVFKESEETVDRLLSRALKGQEDRNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRSDVIGKMLVGEVFGSCCQLKGSDSMTKFMIVLHNALGGQETDKFPFSFLDRHGKYIQTFLTANKRINMNGQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGIKNPLSGIRFTNSLLEDTGLTDEQKQFLETSSACEKQMSKIIHDIDLESIEDRSLELEKGEFLLGNVINAVVSQVMLLLRERKLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVNPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMLNNNYALTHHLTRQLKGQAFEFEQSNLASYPSHTFIVEEMRLVHGQVESPVKIFKQMLYIISSCSELQSIVGLNCIHPFPALLSVLIVTAYTK 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0982 1169 ProSiteProfiles PAS repeat profile. 623 694 IPR000014 -
Aed9g0982 1169 Gene3D - 963 1095 IPR036890 -
Aed9g0982 1169 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Aed9g0982 1169 SUPERFAMILY PYP-like sensor domain (PAS domain) 632 743 IPR035965 -
Aed9g0982 1169 PANTHER PHYTOCHROME 10 1085 - -
Aed9g0982 1169 CDD PAS 768 876 IPR000014 -
Aed9g0982 1169 Pfam PAS fold 757 876 IPR013767 GO:0006355
Aed9g0982 1169 Pfam PAS fold 626 741 IPR013767 GO:0006355
Aed9g0982 1169 Gene3D - 212 570 IPR029016 -
Aed9g0982 1169 Gene3D - 414 587 IPR043150 -
Aed9g0982 1169 PANTHER TWO-COMPONENT HISTIDINE KINASE 10 1085 - -
Aed9g0982 1169 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 199 IPR035965 -
Aed9g0982 1169 TIGRFAM sensory_box: PAS domain S-box protein 630 745 IPR000014 -
Aed9g0982 1169 PIRSF Phytochrome_conventional 12 1091 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aed9g0982 1169 Gene3D PAS domain 621 745 - -
Aed9g0982 1169 MobiDBLite consensus disorder prediction 1 31 - -
Aed9g0982 1169 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1093 IPR036890 -
Aed9g0982 1169 SUPERFAMILY GAF domain-like 211 406 - -
Aed9g0982 1169 Pfam His Kinase A (phospho-acceptor) domain 902 961 IPR003661 GO:0000155|GO:0007165
Aed9g0982 1169 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Aed9g0982 1169 CDD PAS 634 741 IPR000014 -
Aed9g0982 1169 CDD HisKA 898 954 IPR003661 GO:0000155|GO:0007165
Aed9g0982 1169 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 399 IPR016132 -
Aed9g0982 1169 ProSiteProfiles Histidine kinase domain profile. 905 1094 IPR005467 -
Aed9g0982 1169 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 557 575 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 524 543 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 439 459 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Aed9g0982 1169 SMART pas_2 83 150 IPR000014 -
Aed9g0982 1169 SMART pas_2 625 692 IPR000014 -
Aed9g0982 1169 SMART pas_2 756 826 IPR000014 -
Aed9g0982 1169 Pfam Phytochrome region 422 596 IPR013515 GO:0006355|GO:0009584
Aed9g0982 1169 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Aed9g0982 1169 Pfam PAS fold 79 198 IPR013654 GO:0006355
Aed9g0982 1169 Pfam GAF domain 232 409 IPR003018 GO:0005515
Aed9g0982 1169 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 875 IPR035965 -
Aed9g0982 1169 Gene3D PAS domain 83 334 - -
Aed9g0982 1169 Gene3D - 881 961 - -
Aed9g0982 1169 SMART gaf_1 231 419 IPR003018 GO:0005515
Aed9g0982 1169 Gene3D PAS domain 770 880 - -
Aed9g0982 1169 SUPERFAMILY GAF domain-like 417 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0982 Aed-Chr9 7044549 7050628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0982 3 1083 Histidine Kinase Gene Family AT2G18790 74.474 0.0 1700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0982 K12121 - gmx:100799831 1958.73