Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0939 ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCATGGTGTTGGTAAATGGCGTACCATACTGAAGGATCCAGAGTTTAATTGTGTCTTATTCCTCCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTAAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAATCAGAAGGGTGCATCATGCCCCGAGACATGATGAGAACACTATGGCTATCACTCCTGTTGCTCCAAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATGGTGTTGCAGCTTCCTGGTCCAAAGAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTCATAGAGGACCAATATTGGGCACTGCCAGGTTTAAAAAGGATGTTGTCTGCTAAATTAAAGTTTTTGACAGCAAGTGGAAAGCTGATCAAGGTAAATCGCAAGTATAGAATTGCAAGTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTTTATTTGGATGGAAGGCAGAAAGCCTCTATGAAAATTGACAGGGACGATTCCAGCATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAAATAAGGTCCATGACTCCACAAGAGGCAGCTGCACTGGCTGCTCGAGCAGTTGCTGAAGCAGAAGCTGCCATACTAGAAGCAGAGGAGGCAGCAAAGGAGGCAGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCAAAAGGGAGAAAATCTCCAAAGAGGGAACGACAAAGGGACGAAATCTGA 903 0.4341 MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFNCVLFLRSNVDLKDKWRNLSVMANGWSSREKSRLSIRRVHHAPRHDENTMAITPVAPSDEEIVDVKPLQVSRDMVLQLPGPKSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKRMLSAKLKFLTASGKLIKVNRKYRIASIAAYSDRRRNSSMFYLDGRQKASMKIDRDDSSILTRSQIDLELEKIRSMTPQEAAALAARAVAEAEAAILEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRERQRDEI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0939 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed9g0939 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Aed9g0939 300 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Aed9g0939 300 Gene3D - 2 59 - -
Aed9g0939 300 SUPERFAMILY "Winged helix" DNA-binding domain 120 193 IPR036390 -
Aed9g0939 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 292 - -
Aed9g0939 300 Pfam linker histone H1 and H5 family 120 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed9g0939 300 Gene3D - 116 193 IPR036388 -
Aed9g0939 300 MobiDBLite consensus disorder prediction 285 300 - -
Aed9g0939 300 MobiDBLite consensus disorder prediction 264 300 - -
Aed9g0939 300 SMART h15plus2 114 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed9g0939 300 SMART sant 4 59 IPR001005 -
Aed9g0939 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aed9g0939 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Aed9g0939 300 CDD SANT_TRF 6 56 - -
Aed9g0939 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Aed9g0939 300 Coils Coil 240 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0939 Aed-Chr9 6751755 6756496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0939 1 234 Single Myb Histone (SMH) Gene Family AT1G49950 58.577 6.10e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed9g0939 Linker_histone 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0939 K09422 - gmx:100780698 451.44