Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0928 ATGGCGACGGCGGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCTCCTGATGATCCCACCCTTCCACAACCGTGGAAGGGTTTGATTGATGGCAGCTCTGGTACGTTATACTATTGGAATCCCGAAACCAATGTTACGCAATACGAAAAACCGGCCCCGGTCACCCCACCTGTGCCTTCGGGCCCTGCACCGAGCTTGGCCCCTATACCAGGGGCTCATACTATGCAGCCTGGTGGGATGGTGCAGCAGCAGCACGGGCAGCAGATGTTGCAGGTACAATCCTCGCAACAGCAGATGGGTCACCTTGCCCAACAGCATGGCCAACCGATGCCGCAGCAACAGCAGCAGAACCAACAAGGGCAGCAGATGATGCAGCCTCAAGGACATCAAACCAGGCAGCAAATGATGCAGCCTCAAGGGCAGCAAATGCATCATCAGATGCCACCACAGGCAATCCATTCACAGCATTTTGGGCAAGTACCTCCTCAGGATCATGGCTCGCATATTGTACAACCTCAGCCACATCAATTCACACCCCAAAACATGCATTATATGTCATATCAACAAAATGCGATGACACCCAGGCAACCAAACTCCCAGCACATTCAGCCAAACATGGTATCCCCTGGGCAGCCTAACTCCCAGCAGGTTCAACATAACATGCATGGTCAGCCCTTTGAAAATCAACAAACAGTGTTTCCTAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACATTCACCATCCCAGTATCCACAAAGGAGTGCCTTGCCCGTTCAGAACAATCAGAACATCCCTGCTGAAGTTGGCTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACCACAGCAATACAGGGCTTTATCAGGCAGCATGCAACAGTCGCCCTCTGGATCTGATTTATATTACCAACATGGTCCTAACTTCCATAACCAGATGAGCCCCGGAATGATGCATGGTCTACCATCCAATGTCCATCCTGCTGGCCAAAAGATGGGTCATGAGGATAATTTACGTGGTAGATCAGGGAATGACTACTACTATAATTCAAGCAAAGATATGTCAGTAATGGGTCATCAGCAGCCAGATATAACTCCAATACCCTTTCCAAGAAATCAGCAGGATATGAGGATTGCCAACACTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTGTTTCTGGGAATGCTGTGCCTGGCATGTTTGTTCCTCCTATTTCACCTCTCTCTACTAACCCTTTAATGAGGCCTCCTTATATGGGATCTTCAGATGCTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTTGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTGATGCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGCTCGATCATCTCGTGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTAGATCGAGGAGCAGACATTGTTGTTGCCACACCCGGTCGGCTCAACGATATACTTGAAATGAAGAAAATTGACTTTGGGCAGGTTTCGCTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGATTGTGAATGAGATTCCACCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCTGGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAAAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAACGGGGTTCTAAGGTCATAGTATTTTGTTCCACAAAAAGGTTATGTGACCAACTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGGGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCAACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTTGTGATCAATTATGATTTTCCCACTGGAATTGAGGACTATGTGCATCGTATAGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGACAGATGGCTTCTCGTGGGCCACCAAACTTTGGAAAGGATCGTGGCGGGATGAGTCGGTTTGACTCTGGTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGGGGTATGAGGGATGGTGGCTTTGGCAGTCGTGGAGGTGGAGGTGGTATGAGGGAGGGTGGCTTTGGTGGACGTGGCGGTGGCTTTGGGGGACGTGGTGGTGGGATGAGGGATGGCAGTTTTGGTGGACGTGGCGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGGTAGTGGGCAAGGCGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGAGGTAGGGGATCTGGGGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGGTACAACATGGATGGTCGTGGACAAGGTCGTGGACGTGGAAGATTTGATAATAGAAGAGATGTTTCTCAAAAAAGTAGAGGCAGAAGTTATAGTCGTAGCCCTGAAAGAGTCCGAACATGGGATTATAGCAGAAGTAGCAGCAGAAGCCGTAGCAGAAGTAGAAGCAGGAGTTGGAGCAGGGGCCGTAGTCGCAGCTATAGCCGTAGTAGAAGTCCTCGTGGTCGCAGTCGCAGCTATAGCCGTAGTAGAAGTCCTCATCGCAGCCGTAGTCGTGGGCGAAGTTACAGCCGCAGTCGTAGCCGTAGCCCCAGTTATGATAGGCGTGATAGGTCAGATCAACAACTTCCTGATCAAAAGGATACCAGGGCAAATGAAGTAGGAACTTCTGATCCAAGAATGCTTCCCGGGTCTTCTGGTCCTGGCACACAAGGGAATTCCCTTTTGGGAACTGAACAAGTGGAGCAGCAACCGGTTGTTGGTAGCACTGATCCAGGTAATCCAGAAGCTGTAGCAGACCCTAGTCATGAACCAGCTTCAGATATTTAG 3444 0.491 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSSGTLYYWNPETNVTQYEKPAPVTPPVPSGPAPSLAPIPGAHTMQPGGMVQQQHGQQMLQVQSSQQQMGHLAQQHGQPMPQQQQQNQQGQQMMQPQGHQTRQQMMQPQGQQMHHQMPPQAIHSQHFGQVPPQDHGSHIVQPQPHQFTPQNMHYMSYQQNAMTPRQPNSQHIQPNMVSPGQPNSQQVQHNMHGQPFENQQTVFPKVEEAEFKNGSQVGHSPSQYPQRSALPVQNNQNIPAEVGSGQVPNVGVNAGQPQQYRALSGSMQQSPSGSDLYYQHGPNFHNQMSPGMMHGLPSNVHPAGQKMGHEDNLRGRSGNDYYYNSSKDMSVMGHQQPDITPIPFPRNQQDMRIANTPFQNVMPSGNGSGVSGNAVPGMFVPPISPLSTNPLMRPPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRHNNSLNGPTVLVLAPTRELATQIQDEVIKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIVFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMASRGPPNFGKDRGGMSRFDSGGGGGRWDNGGRGMRDGGFGSRGGGGGMREGGFGGRGGGFGGRGGGMRDGSFGGRGGGFGGRGGMRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRYNMDGRGQGRGRGRFDNRRDVSQKSRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSYSRSRSPRGRSRSYSRSRSPHRSRSRGRSYSRSRSRSPSYDRRDRSDQQLPDQKDTRANEVGTSDPRMLPGSSGPGTQGNSLLGTEQVEQQPVVGSTDPGNPEAVADPSHEPASDI 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0928 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 665 IPR014001 -
Aed9g0928 1147 Pfam Helicase conserved C-terminal domain 691 799 IPR001650 -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 1015 1062 - -
Aed9g0928 1147 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 460 488 IPR014014 GO:0003724
Aed9g0928 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 814 IPR027417 -
Aed9g0928 1147 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 288 942 - -
Aed9g0928 1147 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Aed9g0928 1147 MobiDBLite consensus disorder prediction 1 28 - -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 1066 1092 - -
Aed9g0928 1147 CDD WW 23 54 IPR001202 GO:0005515
Aed9g0928 1147 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Aed9g0928 1147 Pfam WW domain 22 52 IPR001202 GO:0005515
Aed9g0928 1147 Gene3D - 436 669 IPR027417 -
Aed9g0928 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 838 IPR001650 -
Aed9g0928 1147 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 611 619 IPR000629 -
Aed9g0928 1147 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 288 942 - -
Aed9g0928 1147 Pfam DEAD/DEAH box helicase 484 654 IPR011545 GO:0003676|GO:0005524
Aed9g0928 1147 Gene3D - 670 841 IPR027417 -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 1101 1128 - -
Aed9g0928 1147 SMART ultradead3 479 682 IPR014001 -
Aed9g0928 1147 Gene3D - 16 54 - -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 837 1147 - -
Aed9g0928 1147 CDD SF2_C_DEAD 679 808 - -
Aed9g0928 1147 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Aed9g0928 1147 SMART ww_5 21 54 IPR001202 GO:0005515
Aed9g0928 1147 MobiDBLite consensus disorder prediction 94 139 - -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 957 1014 - -
Aed9g0928 1147 SMART helicmild6 715 799 IPR001650 -
Aed9g0928 1147 MobiDBLite consensus disorder prediction 155 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0928 Aed-Chr9 6598599 6605879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0928 448 837 Eukaryotic Initiation Factors Gene Family AT3G19760 32.992 2.39e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0928 K12823 - gmx:100807830 1422.91