Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0904 ATGGATTCTTCAATGGCAAGTGCTGGTGCTGATGGTGGTAGGTCTGGTGATGAAGGCTCTCACCCCTTCAACAAGGGAAGAAGAAACTCCTACAAACGTCTCACGGCTGTTCAAACAACTAAGCTTGAGAGATATATAAGAGATTGCCCACACCCAGACGAAGCCCAACGACGTCAATTAGCTGCTGAGATTGGGCTGGAGCCCAAACAAATAAAGTTTTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGAGAGCAGATAACACTACTCTCCGGGTTGAGAATGATAGGATAAACAATGAAAACATTGTAATGAAAGAGGCATTGATGAATATGCTTTGCCCATCTTGTGGGGGTCCACCGTGTGAAGGAGAAGAACGTCATGAACATGTTATGCAAAAGATGCAACTTGAAAATGCTCAGCTAAAAGAAGAGCATGAGAAAGTGTCTAGCCTTCTTGCAAGGTTCTTGGAGAAGCAAATGTCACCACCAGAGTTCCAACAAGCTTTTAATAACATTCCCATCATAGGATCAAGTTCATCACATGCTGCAGCACTTGAAAATTCACCAAACTATGAGATTGGTGGAAGTTCAAGTCACCATGATCATCGAAGTCTTGTTGGTGGTATGCAAATTATGGATGGTAGTGACCATAACAACTTAGTGGGAAGTGAAGGTTTAGAAAAGGCCCTTATGTTGAAGGTTGCTGCTGCTGCAATGGAGCAATTGGTTAAGCTTCTTCGGACCAATGAGCCATTTTGGATCAAGTCTTCATCTCAAGGTGAGAAGCTGAGTCTTCACAGTGAAAACTATGAAAAAATGTTCCCAAAGAGCAACAATTTCAAAGGTTCCAATCTGCGTGTGGAAGCAACAAAGGACTCAGGAATTGTAAGCATTAATAGCATTCAACTAGTTGACATGTTTCTAGATCCGGGAAAATGGGCTAATCTGTTCCCAACCATTGTCAAGAAAGCAGAAACAATGAAAGTGCTTGAACATGGTTTGGTAGGAAACCGAAGTGGAGCTTTGCAGCTGATGTTTGAACAAATGCATGTTCTTTCACCTTTGGTGCAACTTCGCGAGTTTCAACTCCTTCGCTATTGTCAACAAATTGAAGAAGGTGTATGGGTGATAGCTGATGTTTCATTCGATTCCTTTCAACAGAAAACCTCTATTTTTCACTCATGGAGATACCCCTCTGGATGCATGATTCAAGAAATGCCTAATGGGTGTTCCATGATTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACGCATCAGCTATACAAAGACCTCATTGGCACAGGAATTGCATATGGAGCAGAAAGATGGATCATGGAGCTCCAAAGAATTTGCGAAAGATTTGCTTGCTTTTATGTTGAAAGGATACCTAGCCATGACTCTGGAGGAGTGATCAGTTCTCTTGAAGGAAGGAGGAGTGTGATGAATTTCTCTCATCGTATGATCAAAATCTTTTGTGAAAGCTTAACCATGTCAGGTAACTTGGACTTCCCACAAATGAAAATGGAGAATAACAATAATAGCGGCGTGAGGGTTTCTCTTCGCAAAAACAGAAACCAGCTTGGTCAACCAAAGGGCATGATTGTTGTAGCTGCTACCTCAATTTGGCTTCCTCTCCATTATATGAAGGTTTTTGAGTTCTTCACTGATGATAGAAGACGCATTCTGTGGGATGTTCTTTGCTGTGGAAATACCGCGAAGAAGGTTGCACACATCTCAAATGGAATTCATCCTGGCAACTGCATATCTATTTTTAGGCCATTCATCCCTAATGAGAACAATGCACTGATTCTGCAAGAGAGTTTCACAACTCCAATGGGATCGTATGTCGTCTATGCTCCAACCGATGTAGCAACTATGAACTCGGCCGTAAATGGAGAAGATTCTTCAATGTTACCAGTGCTTCCATCAGGGTTTGTGATCTCTCCAGATGGTGAACCAAATGCAGCATTGGGAGCATTCAACAGTTCAGACATTGAAAGATTGGGAGGCTCATTGCTCACTGTGGCTTTTCAAATACTTGCTTCTAGCCCAGATGGAATCAATATGCCAAACATGGAATCTGTGTCAGCTGTGAACACCCTTTTGACCTCAACAATCATGAAAGTCAAGGATGCTTTGAATTGCAACAACTTGGAGTAA 2181 0.4204 MDSSMASAGADGGRSGDEGSHPFNKGRRNSYKRLTAVQTTKLERYIRDCPHPDEAQRRQLAAEIGLEPKQIKFWFQNKRTQIKNQHERADNTTLRVENDRINNENIVMKEALMNMLCPSCGGPPCEGEERHEHVMQKMQLENAQLKEEHEKVSSLLARFLEKQMSPPEFQQAFNNIPIIGSSSSHAAALENSPNYEIGGSSSHHDHRSLVGGMQIMDGSDHNNLVGSEGLEKALMLKVAAAAMEQLVKLLRTNEPFWIKSSSQGEKLSLHSENYEKMFPKSNNFKGSNLRVEATKDSGIVSINSIQLVDMFLDPGKWANLFPTIVKKAETMKVLEHGLVGNRSGALQLMFEQMHVLSPLVQLREFQLLRYCQQIEEGVWVIADVSFDSFQQKTSIFHSWRYPSGCMIQEMPNGCSMITWVEHVEVDDKIQTHQLYKDLIGTGIAYGAERWIMELQRICERFACFYVERIPSHDSGGVISSLEGRRSVMNFSHRMIKIFCESLTMSGNLDFPQMKMENNNNSGVRVSLRKNRNQLGQPKGMIVVAATSIWLPLHYMKVFEFFTDDRRRILWDVLCCGNTAKKVAHISNGIHPGNCISIFRPFIPNENNALILQESFTTPMGSYVVYAPTDVATMNSAVNGEDSSMLPVLPSGFVISPDGEPNAALGAFNSSDIERLGGSLLTVAFQILASSPDGINMPNMESVSAVNTLLTSTIMKVKDALNCNNLE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0904 726 Coils Coil 128 162 - -
Aed9g0904 726 MobiDBLite consensus disorder prediction 1 30 - -
Aed9g0904 726 Pfam START domain 238 460 IPR002913 GO:0008289
Aed9g0904 726 Gene3D - 236 440 IPR023393 -
Aed9g0904 726 CDD START_ArGLABRA2_like 232 459 - -
Aed9g0904 726 SUPERFAMILY Homeodomain-like 22 88 IPR009057 -
Aed9g0904 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 722 IPR042160 -
Aed9g0904 726 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Aed9g0904 726 ProSiteProfiles START domain profile. 228 463 IPR002913 GO:0008289
Aed9g0904 726 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Aed9g0904 726 SUPERFAMILY Bet v1-like 231 461 - -
Aed9g0904 726 SMART HOX_1 27 89 IPR001356 GO:0003677
Aed9g0904 726 CDD homeodomain 28 86 IPR001356 GO:0003677
Aed9g0904 726 SUPERFAMILY Bet v1-like 483 688 - -
Aed9g0904 726 Gene3D - 15 99 - -
Aed9g0904 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 20 722 - -
Aed9g0904 726 SMART START_1 237 460 IPR002913 GO:0008289
Aed9g0904 726 Pfam Homeodomain 29 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0904 Aed-Chr9 6354296 6359142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0904 27 721 Homeobox Transcription Factor Family AT1G73360 44.648 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed9g0904 START 3.1e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0904 K09338 - gmx:100795075 1182.93