Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0889 ATGGAACTTGCAAGACCAAACTCAAGTAGAAAAAGACTGAAAGATTTATTGCTTCAGAGTGATAATCGTCATTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCCATAGTGGATGGAGGTAGTGACACTTTGCAGAGACACCAAGGGATGGCCAGGGCCATTGTAACGTTGTTGCTTTCTTTGGGACATTCAATATTGCTTATGTCATGCATCCTTGTACACTATTTGACCATGACTGGGTGGGTGTTCCCAGTTTTGTCTGTGACATTGGATGATTGGTCAGAGGATGAAATAGATGCAATGATGGAAGTTGGGGGAAATGCTTCTGCTAATTCAATTTATGAAGCTTATTTTCCTGAAGGATATACGAAACCCGGACCAGATGCTGGTCATGAGCAGCGTTCGAAGTTCATACGGTCAAAATATGAATTACAAGAATTTCTGAAATCAAGTTTGCGCATTGTGTCTGGAAAAAGCAATCGACAATCAAGTTCTGCCACAAGTAGTTTTATGGATAAAAGTACTAGTTCACAGAGAATGGAAGGTATGGTGGAATTTATTGGAGTGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCGTATGTTATTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCCGTTCCCGAGCATTACGGACCGATCAAATTGCAAGTATATGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTATGATAACATCTGCTATGGCATTTGGAGATGCAGAAATATTTGACGATATGCAAATAGGAAAATGGTTAAAATCGGATGACAATGCCCTTACTGAGGATAGCACAGTTAATATTGTTGATGGTAAGGTTAAACAAATGATGACACTCAAGCTCCAGAATGTTGAAAGTGGAGAATTAGATCTTGAACTTGAGTGGATTCCTCTTGACCAATAG 1038 0.3988 MELARPNSSRKRLKDLLLQSDNRHCADCNAPDPKWAIVDGGSDTLQRHQGMARAIVTLLLSLGHSILLMSCILVHYLTMTGWVFPVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYFPEGYTKPGPDAGHEQRSKFIRSKYELQEFLKSSLRIVSGKSNRQSSSATSSFMDKSTSSQRMEGMVEFIGVLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTTVVRSNLNPVWNEEYMLSVPEHYGPIKLQVYDHDTFSADDIMGEADIDLQSMITSAMAFGDAEIFDDMQIGKWLKSDDNALTEDSTVNIVDGKVKQMMTLKLQNVESGELDLELEWIPLDQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0889 345 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 69 345 - -
Aed9g0889 345 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 185 274 IPR035892 -
Aed9g0889 345 SMART arf_gap_3 10 156 IPR001164 GO:0005096
Aed9g0889 345 Gene3D C2 domain 186 345 IPR035892 -
Aed9g0889 345 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 148 IPR001164 GO:0005096
Aed9g0889 345 SMART C2_3c 190 285 IPR000008 -
Aed9g0889 345 SUPERFAMILY ArfGap/RecO-like zinc finger 10 40 IPR037278 -
Aed9g0889 345 Gene3D Arf GTPase activating protein 2 155 IPR038508 -
Aed9g0889 345 Pfam Putative GTPase activating protein for Arf 69 150 IPR001164 GO:0005096
Aed9g0889 345 CDD C2_ArfGAP 188 332 - -
Aed9g0889 345 Pfam C2 domain 189 279 IPR000008 -
Aed9g0889 345 PRINTS HIV Rev interacting protein signature 86 107 IPR001164 GO:0005096
Aed9g0889 345 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Aed9g0889 345 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 69 345 IPR044518 GO:0005096|GO:0005543
Aed9g0889 345 SUPERFAMILY ArfGap/RecO-like zinc finger 82 150 IPR037278 -
Aed9g0889 345 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 55 - -
Aed9g0889 345 ProSiteProfiles C2 domain profile. 171 288 IPR000008 -
Aed9g0889 345 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 55 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0889 Aed-Chr9 6227777 6233714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0889 3 345 C2H2 Transcription Factor Family AT4G21160 59.384 7.09e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0889 K12486 - gmx:100810806 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0889 9 6227777 6233714 Aed9g0889 9 6227777 6233714 ECH