Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0885 ATGACCAGTTATAATAATTATAGCAACTTGGTTGATCAGCATCAAGCTTCTGTACATTTTTGCCTGGCTCTATTCCTCTTCTATTTGGACATTGTATTGCATGCAAATCAGGAAATCATGACTTCTTCTACTACTCATGACCTCTCAGATAATGAAGCTGACGAGCAGCAGCAGTCAGAATCACAAATGCAGCCTTTATCTGGAAATGGAATTTCTCATGCAGGTATTGGTACTCAGAATGTTCAGTATGCAACACCTCCACAGCTTGGAACTGGGCATGCTGTGGTACCACCCACTTACCCATATCCAGATCCCTACTACAGAAGTATCTTTGCTCCCTATGATGCTCAACCTTATCCCCCACAACCCTATGGCGGAAACCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTACCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTACGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGTGTCAACTGACGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGAGCGTGCACCATCAGATAGAACATCCTAA 738 0.4241 MTSYNNYSNLVDQHQASVHFCLALFLFYLDIVLHANQEIMTSSTTHDLSDNEADEQQQSESQMQPLSGNGISHAGIGTQNVQYATPPQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQPYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVVSTDESQSNINLNSDKNERAPSDRTS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0885 245 Gene3D - 149 210 - -
Aed9g0885 245 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Aed9g0885 245 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Aed9g0885 245 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 40 228 IPR001289 GO:0003700|GO:0006355
Aed9g0885 245 MobiDBLite consensus disorder prediction 220 235 - -
Aed9g0885 245 MobiDBLite consensus disorder prediction 55 71 - -
Aed9g0885 245 MobiDBLite consensus disorder prediction 167 183 - -
Aed9g0885 245 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Aed9g0885 245 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Aed9g0885 245 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Aed9g0885 245 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 40 228 - -
Aed9g0885 245 MobiDBLite consensus disorder prediction 166 187 - -
Aed9g0885 245 MobiDBLite consensus disorder prediction 44 71 - -
Aed9g0885 245 MobiDBLite consensus disorder prediction 204 245 - -
Aed9g0885 245 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0885 Aed-Chr9 6215530 6218266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0885 40 245 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.373 6.90e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed9g0885 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0885 K08064 - gmx:100809036 369.392