Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0855 ATGCAAACCGGTGGCGAAAGCGGAAGAGGAACTCCGCAACCGCCGGAGGAACCGAATCTGCGACCGGAATGGAGGCGCTCAGCTGAAACCGCCGAGCAGGACCTTGTTCTGCAACCTGAATGGCGGCGCCCGAGGCCAACCGCTCCTCTTTCAGAACCTTCCAGTCGCGGCCGCGAAGAGGAGTCGCTATTCCAACCAGAATGGCGGCGCTCGAAGCCTAGTGCGAATATTTGGGAACCTGAATGGAGGCGATCGAGACCAGCGTCAACGGCGATGGGGTTTCCGTGGAACCAGAATTACGGTGGTCGGAAAGGTAGCGCATCGAGTTCCGGTGGTGGCGTTGAAAGTCGCGGAGACCCTAACGACCTTTGGCGGCGACCTACAGATTCTGTAGTTCCCAAACTGGAAAAACTACAAATATCAAAACAGTCACCTGCATCGGTTTGTACCCTTGAAAAAAAGGATAAAATTTCACCTATTCAGAGACCTGACAGTGGTGGCACGTTAGCAATTCTAACAAGCAGACTTCGTGTCAATCATTTCTGTGTTAAGTTTGATGCAGAGAGTATAATAATGCATTATAATGTTGGTGTCAGACCTAAGGTTTCTTCAAAAATTGGCCAGCCTCGGAAATTATCAAATTCTGATCTGTCCATGATAAAAGAGAAACTGTTTTCTGATGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGATGGCGCAAAAAATATTTATAGTGCTGTACAATTACCAGAAGAGAGCTTTACTGTGGAGATCTCTGAAGGAGAGGATGAAAAGGCCATTTCATATAGTGTTACCTTAACTCTTGTTAATAAACTCAGGCTTTGCAAGTTAATGGACTATCTTAGTGGGCATAACCTCTCCATTCCTAGAGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCAGCTAGACGTACTATTTCTGCAGGACGACACTTCTATCCCACAAATCCTCCTGTCGTAATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGGTTTCATCATAGGTTAAAGCCTACATCTCAGGGTATGTCCTTATGTGTAGACTACTCAGTATTGGCTTTTCGAAAGCGAATGTCAGTCTTGGATTTCTTGCATGAGCGTATTGATAACTTTAAATTGGATGAATTCAAAAAATTCAGGAAATCTGTTGAGGAGGCACTTATTGGAGTGAAAGTTAATGTGACTCATCGTAAATGCAATCGGAAATACATTATTTCAAGATTAACACCTATGATTACAAGGTATGTTACTTTTCCCATTGACAGTACTGGTGGATGGAGTCACGCAAAGGATGCCAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGATATTGTGTACAAAGATATTCCTTGTCTAGATTTAGGGAAAGACAGGAAGAAGAACTATGTACCCATGGAATTCTGTGTTTTGGTTGGGGGCCAGAGATATCCCAAAGAGCGTCTGGATGTTATTTCTGCAAATACATTGAAAGCAATGTCACTAGCTCACCCAAATGAGAGGGAGTGTGCAATACAAAAGATGGTGCAGTCTAGTGATGGACCTTGCAGTGGTGACATAATTCAAAATTTTGGGATGAGTGTCAACACAACCATGACAACTATTGTAGGACGAGTACTTGGTCCTCCAGAGTTGAAGTTAGGTGATCCAAATGGAAAGATCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAAGCAGTTGAGTATTGGGGTGTTCTTGACTTCACTAGTTGTGGGCCATATAAGTACAAATTAAGCGGCAAGGAATTCATTCAAAAGCTTACAGATAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAATATACTTGCAAGTTATGATTTACTATCCGAATTACTTGAAAAAATTAACAACATTTGTAAATATAACCAAGCTCACCTGCAATTTCTTCTCTGTGTAATGGCTAAAAAAAGTCCTGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAAACTTGGGATAGTGACACAATGCTGCCTGTCTAATAGTGCTAATGAAGGGGAGGACAAATTTTATACTAATCTTGCTCTGAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTACCTTACTTTGAGGGTGAAGGACATGTTATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTACCAAGACACCAAGAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAATTGGCCTGCTGCGAATCGTTACGCAGCACGTGTTTTCCCACAACACAATCGAAGTGAGAAAATATTGAACTTTGGGGATGTTTGTCTTGAGCTTGTTGCATGCTATAGGAGGATGAATGGAGTTAGGCCAGAAAGGATTGTTGTTTTTCGCGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTGCTAGACTTGAAGAGAGTATTTCAAAGAGTAAATTACTCTCCTACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTCCCAGAGGGTTGGAGGGATGGGTCTTCCAGTGGCAATATTTTGCCGGGAACAGTTGTGGACACAAAAGTTGTACATCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGAACAAGCAAGCCTACGCATTACCATGTCTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTAATATACGAGATGTGCTTCACCTTTGCAAAGTGCACTAAACCTGTATCTTTGGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGAATTGGGATGCAATCTCCAAAGTCAACAGCATTTTCATCTTCTAAAGATGCTTCTTCAGTTCCACGAACTGCTTCATTTGAACAGGGATTTTACACATTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3054 0.4234 MQTGGESGRGTPQPPEEPNLRPEWRRSAETAEQDLVLQPEWRRPRPTAPLSEPSSRGREEESLFQPEWRRSKPSANIWEPEWRRSRPASTAMGFPWNQNYGGRKGSASSSGGGVESRGDPNDLWRRPTDSVVPKLEKLQISKQSPASVCTLEKKDKISPIQRPDSGGTLAILTSRLRVNHFCVKFDAESIIMHYNVGVRPKVSSKIGQPRKLSNSDLSMIKEKLFSDDPERLPLEMTAHDGAKNIYSAVQLPEESFTVEISEGEDEKAISYSVTLTLVNKLRLCKLMDYLSGHNLSIPRDILQGMDVVVKENPARRTISAGRHFYPTNPPVVMKDLHHGIIAVGGFHHRLKPTSQGMSLCVDYSVLAFRKRMSVLDFLHERIDNFKLDEFKKFRKSVEEALIGVKVNVTHRKCNRKYIISRLTPMITRYVTFPIDSTGGWSHAKDASLLTFFKDKYGKDIVYKDIPCLDLGKDRKKNYVPMEFCVLVGGQRYPKERLDVISANTLKAMSLAHPNERECAIQKMVQSSDGPCSGDIIQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGRSMVEGKAVEYWGVLDFTSCGPYKYKLSGKEFIQKLTDKYKKLGIYMQEPIWYEESSMNILASYDLLSELLEKINNICKYNQAHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNSANEGEDKFYTNLALKINAKLGGSNVELSNGLPYFEGEGHVMFLGADVNHPGYQDTKSPSIAAVVATVNWPAANRYAARVFPQHNRSEKILNFGDVCLELVACYRRMNGVRPERIVVFRDGVSEYQFDMVLNEELLDLKRVFQRVNYSPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVVHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKSTAFSSSKDASSVPRTASFEQGFYTLHADLENIMFFI 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0855 1017 SUPERFAMILY Ribonuclease H-like 664 971 IPR012337 -
Aed9g0855 1017 Pfam N-terminal domain of argonaute 175 309 IPR032474 -
Aed9g0855 1017 SMART DUF1785_2 318 371 IPR014811 -
Aed9g0855 1017 SMART PAZ_2_a_3 372 505 IPR003100 GO:0005515
Aed9g0855 1017 Gene3D - 742 1017 IPR036397 GO:0003676
Aed9g0855 1017 Pfam Piwi domain 673 967 IPR003165 GO:0003676
Aed9g0855 1017 CDD Piwi_ago-like 535 969 IPR045246 -
Aed9g0855 1017 SUPERFAMILY PAZ domain 367 526 IPR036085 GO:0005515
Aed9g0855 1017 CDD PAZ_argonaute_like 372 487 - -
Aed9g0855 1017 Pfam Argonaute linker 2 domain 515 561 IPR032472 -
Aed9g0855 1017 ProSiteProfiles PAZ domain profile. 372 488 IPR003100 GO:0005515
Aed9g0855 1017 Pfam PAZ domain 382 501 IPR003100 GO:0005515
Aed9g0855 1017 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 1016 - -
Aed9g0855 1017 MobiDBLite consensus disorder prediction 1 127 - -
Aed9g0855 1017 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 56 1016 - -
Aed9g0855 1017 Gene3D paz domain 366 492 - -
Aed9g0855 1017 MobiDBLite consensus disorder prediction 91 115 - -
Aed9g0855 1017 Pfam Argonaute linker 1 domain 320 370 IPR014811 -
Aed9g0855 1017 Gene3D - 554 735 - -
Aed9g0855 1017 ProSiteProfiles Piwi domain profile. 672 971 IPR003165 GO:0003676
Aed9g0855 1017 SMART Piwi_a_2 672 970 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0855 Aed-Chr9 5949493 5958076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0855 176 971 Eukaryotic Initiation Factors Gene Family AT1G48410 35.629 4.80e-142 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0855 K11593 - gmx:100783571 1843.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0855 9 5949493 5958076 Aed9g0855 9 5949493 5958076 ECH