Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0854 ATGGGGGATCAGGGTGTTGATTTAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGAAGAGGAAGTGTGGAAAGAGAGTCAAGAGGCTGAGGAACCTGTGACTGTGGTGGAAGAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGCTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGTTCATGGAAAGGTCACCAGGTCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTGTGCGGAGGAGTCAGTGGTTGACTATTTAGCACTCTTGGATGGGTTGCTTGAAGCTGTGCAGAACAAGATCCGCAGGGTTTTTGCTTTCACAGATTCTGAGTTGATGCATGATCAGATAACATTTGGGAAAAAATTGGAAATGCCTCTTTTGACGGCACTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCCTCTACAGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAGACTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTCACACACATTCTGTTCACATTGCATGAGGGCATATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCATATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCCGAAGCAAATATTGATCATTCAGATAGAATTTATTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGCCAGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCACCGTCTTGCACAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCATGGCTGCTACCACATGACTTGCTGGTGTGGTCATGAGTTCTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCACTCTCCATGATCATGGACGCATACTCGGACCAAGAACGATCGCAGCTTGCACTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTCACCAATCTCCTCCTCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAGGATTACACACAATGA 1566 0.4374 MGDQGVDLGVNVGREEEEDEFCSCCGDEEEEVWKESQEAEEPVTVVEEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVFMERSPGLPAIRVQKKLDFCAEESVVDYLALLDGLLEAVQNKIRRVFAFTDSELMHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPVNGERLLKNCSICCDDKPVPIMITLKCSHTFCSHCMRAYADGKVQSCQVPIRCPQPGCKYCISVTECRSFLPFTSFESLEKALSEANIDHSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDEDNSEDSVAHSLQESEQWAWETFNSLSMIMDAYSDQERSQLALIQRFLAGGFSLSDHNPHQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYTQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0854 521 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Aed9g0854 521 Gene3D - 344 470 - -
Aed9g0854 521 SUPERFAMILY Ribonuclease H-like 74 177 IPR012337 -
Aed9g0854 521 ProSiteProfiles Zinc finger RING-type profile. 207 251 IPR001841 -
Aed9g0854 521 SUPERFAMILY RING/U-box 206 283 - -
Aed9g0854 521 SMART ibrneu5 274 346 IPR002867 -
Aed9g0854 521 SMART ibrneu5 356 415 IPR002867 -
Aed9g0854 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 287 IPR013083 -
Aed9g0854 521 Gene3D - 61 193 IPR036397 GO:0003676
Aed9g0854 521 Pfam Reverse transcriptase-like 70 176 IPR002156 GO:0003676|GO:0004523
Aed9g0854 521 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 520 - -
Aed9g0854 521 Pfam IBR domain, a half RING-finger domain 281 346 IPR002867 -
Aed9g0854 521 Pfam IBR domain, a half RING-finger domain 366 415 IPR002867 -
Aed9g0854 521 SUPERFAMILY RING/U-box 359 423 - -
Aed9g0854 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 520 IPR031127 GO:0004842|GO:0016567
Aed9g0854 521 ProSiteProfiles TRIAD supradomain profile. 203 421 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0854 Aed-Chr9 5942666 5947545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0854 30 406 C3H Transcription Factor Family AT2G19610 25.445 9.00e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0854 - - gmx:100783040 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0854 9 5942666 5947545 Aed9g0854 9 5942666 5947545 ECH