Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0751 ATGTCCCTCACCGGCGATGCCGCCAGCCTAGAGTCCGACTCCGCCTCCGCCGGAATGAAGAACCGGCCGTGGCACTTTCAGTTCTTCGTCCGCACGGTGCCGACGGGACGCAGCATGGTCATGACCGGTTTCCCGGAAGAGACGGTGAAATCGGTCCTCCACAGGATCGAGTGGGTCACCGGAATACCGTTGAAGGAGCAGAGGGTTATATACAACGGAAAACAGCTTCAATTGGAGCAGACTCTGCAAGAGTGCGGCGTCGAAAACGATTCCAATCTCCACATCGTTGGCCACTTGCGTAGCGGACTCTACCCCGCGGCTTCACGGATTGTCGACTACATCATCGCCATGCTCGCGCACGTGTGCCGCGGCTGCTGCAACACCTCCTCCCCTCGCCACACGTGCGAGGCTCTCAACGCCGTTAAGGTCCTCACCACGCGCCACTTCAACCTCCCAGGCTTCGCCGAGGTTTTCGCGGCCTCCAAGGGCCCCTTGATCCTTGCCTCGCTCTACGCGCCCTCGCGCGGCGCGTGTAACAGGGAACTCGCTGAAGCTTGCATTAGCAATTTTCTCAGTTGCTCCCGCGCGAAGAATTCGCAGAGTGTTTCCGCTGGGGCAGTTATGGAGTTCTGCAAACAGCTTAAAAAGATTGGGTGTGGATGCGACGATCCTTTGTATGTTTCGTGTAGAAGCACATTGGGGCTGTTGTTGGAGACTATTGGGGTTTCGTATGGTTCTGGGAGCGTGAAACGGAAGGTTTCGCTTCGTGATGTTTTCTCCTTTGTTCCTGAGCTTACAGATAGGTTGTTGATGGGGTTGGATTATAGTATAAGGTTTGCGAGTTCTAGCCAGAGGCCTTCGTTGGGAGAGGTTTCGGATTTTGCAATGTTTGTAACCCCTTTAAGGTGTAGAGTTATGCTTCAGCAGCAAGGTTTGGGGGGTTTTGTGAATGAAGATGGAAAATGTAGTGTGGAGGAGGAGGATCAATTGCTTGCAGAAGAGGTTGATTATCTTCGGGTTGTGTTTATTCAGGTGTTGAGCAAAATGGATGACTGTCTTCGCATGATGGAGTTGTGCTTGGCCGGCAAGGAACCGGGGAGGAGAGGTTTTGTACTCTACCCCGCTTGGTCTGAGTATCTTCGTGTCTTGAAGGAGTTGTATGAGATTTCCAAGGTCTTTGATGGCGCGGAGGAGATGTTTTGGACAATTTTGAGGTGTCATATGAATGTGTTGTCTGAGCTTGTTGTTGCATTTGCAAAGAGAGGTGGTGACCATAGGTGGATTCTTGAGGACAGGAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCGATGATGCTGTTCCCTGATGCAAAAGAAGACTATGACCTGTTTCATGAGATGCTTATTGATAGGTCTCACTTACTGGCTGAGTCTTTTGAGTACATAGGAAGAGCGAAGCCTGAGTCTCTGCGTTCTGGTCTGTTTTTGGAATTTAAAAATGAGGAAGCTACAGGACCTGGTGTGCTGCGGGAGTGGTTTGTTTTGGTGTGTCGTGCAATATTTGATCCACAAAATGCTCTTTTTGTGGCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAGTACTTTAGGTTTTCTGGTCGCGTTATTGCATTGGCTTTGATGAAAAAGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCATGCAATTAGCTGGAAATGATGTTACTTTAGAAGACATACGGGATGCAGATCCTTACTTGTACAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTGGGACTGACATTTGTTCGAGAGGTGGAGGAATTAGGATGCAGGAAAGTGGTTGAACTTTGCCCTGGTGGGAAAAGCATTGTAATGAATAGTAAGAATAGGGAGAAGTATGTTGATCTTCTTATACAAAATTGTTTTGCAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTGCTGATATTCTTTCCAACTCAAAGCTCCAACAATTCTTCCAATATTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTATTGAAGATTGGAAAGCACATACCAAGTACAAGGGTTATAAAGAGACTGATCGTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCACAACAAAGGAAGGTTCTTATTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGTCTTCCCCTCTATACATTTGCAGGACTGTGGAACCTAACAATCACCTGCCATCATCTCACACATGTTTTTACCAGCTGTGTTTCCCCCGGTATTCATCTATGTCTGTCATGCAAGATCGTTTTGAAGTCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACTAATTAA 2460 0.4707 MSLTGDAASLESDSASAGMKNRPWHFQFFVRTVPTGRSMVMTGFPEETVKSVLHRIEWVTGIPLKEQRVIYNGKQLQLEQTLQECGVENDSNLHIVGHLRSGLYPAASRIVDYIIAMLAHVCRGCCNTSSPRHTCEALNAVKVLTTRHFNLPGFAEVFAASKGPLILASLYAPSRGACNRELAEACISNFLSCSRAKNSQSVSAGAVMEFCKQLKKIGCGCDDPLYVSCRSTLGLLLETIGVSYGSGSVKRKVSLRDVFSFVPELTDRLLMGLDYSIRFASSSQRPSLGEVSDFAMFVTPLRCRVMLQQQGLGGFVNEDGKCSVEEEDQLLAEEVDYLRVVFIQVLSKMDDCLRMMELCLAGKEPGRRGFVLYPAWSEYLRVLKELYEISKVFDGAEEMFWTILRCHMNVLSELVVAFAKRGGDHRWILEDRSVTNFECRRHLAMMLFPDAKEDYDLFHEMLIDRSHLLAESFEYIGRAKPESLRSGLFLEFKNEEATGPGVLREWFVLVCRAIFDPQNALFVACPNDCRRFYPNPASKVHPRHLEYFRFSGRVIALALMKKVQVGIVFDRVFFMQLAGNDVTLEDIRDADPYLYRSCKQILEMDADFIDSDALGLTFVREVEELGCRKVVELCPGGKSIVMNSKNREKYVDLLIQNCFATSISEQVSHFAKGFADILSNSKLQQFFQYLELEDLDWMLHGSENAISIEDWKAHTKYKGYKETDRQISWFWEIVGRMSAQQRKVLIFFWTSVKYLPVEGFRGLSSPLYICRTVEPNNHLPSSHTCFYQLCFPRYSSMSVMQDRFEVITQEHIGCSFGTN 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0751 819 SMART hect_3 478 817 IPR000569 GO:0004842
Aed9g0751 819 SUPERFAMILY Ubiquitin-like 25 104 IPR029071 -
Aed9g0751 819 Pfam Ubiquitin family 29 100 IPR000626 GO:0005515
Aed9g0751 819 ProSiteProfiles HECT domain profile. 480 819 IPR000569 GO:0004842
Aed9g0751 819 Pfam HECT-domain (ubiquitin-transferase) 509 811 IPR000569 GO:0004842
Aed9g0751 819 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 15 817 - -
Aed9g0751 819 SUPERFAMILY Hect, E3 ligase catalytic domain 455 804 IPR035983 GO:0004842
Aed9g0751 819 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 15 817 - -
Aed9g0751 819 ProSiteProfiles Ubiquitin domain profile. 26 102 IPR000626 GO:0005515
Aed9g0751 819 PRINTS Ubiquitin signature 79 100 IPR019956 -
Aed9g0751 819 PRINTS Ubiquitin signature 58 78 IPR019956 -
Aed9g0751 819 PRINTS Ubiquitin signature 37 57 IPR019956 -
Aed9g0751 819 Gene3D Hect, E3 ligase catalytic domain 580 662 - -
Aed9g0751 819 Gene3D Hect, E3 ligase catalytic domain 703 818 - -
Aed9g0751 819 SMART ubq_7 26 98 IPR000626 GO:0005515
Aed9g0751 819 Gene3D Hect, E3 ligase catalytic domains 462 694 - -
Aed9g0751 819 CDD HECTc 459 817 IPR000569 GO:0004842
Aed9g0751 819 Gene3D - 20 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0751 Aed-Chr9 5224328 5229510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0751 27 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.743 2.72e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0751 - - gmx:100789233 974.156