Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed9g0731 | ATGAGTCAACTCGGCGTGGTGTTGCAGGAATCGCTGCGGAGGGAGCCCAGATCGACCATTCTCGGCTTGCTGAGGGAGCAAATGGACGCCGTAGACGGTGTGGCCCACCGGAGGCGCAGCTTCAAGGAGCGCTTTGGTTTCATCGGCTGTTGTGGGGCCACCTGGGGCCAAGGAGACCATGAACAACAACAACAGCAGCAGCAGGAGGAAACGGATCCGGGTCCAGGTTCGGGACCCGAGTGCGTGGCTCCCACGCCGGCTAGTTCGGGTATGAATCTTGCGGCGGCGTTGGCGGCGGAGAGGCAGCTCCGGGGGCCGCAGGAGGAGGCAAGTGCGGTGAGGGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTAGAAGAGACGGAGGGAGGGGATCACGACACAGAGAAGAAGAAGGAGAAAGAGAAAGAGAAAGAAAAAGAAAAAGAAGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGTGCAGCGTTCATCCCATGTGGGCACACTTTTTGCAGAGTGTGTTCAAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG | 624 | 0.5865 | MSQLGVVLQESLRREPRSTILGLLREQMDAVDGVAHRRRSFKERFGFIGCCGATWGQGDHEQQQQQQQEETDPGPGSGPECVAPTPASSGMNLAAALAAERQLRGPQEEASAVRAPGTPWRVSLMRLLEETEGGDHDTEKKKEKEKEKEKEKEGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed9g0731 | 207 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 18 | 207 | - | - | |
| Aed9g0731 | 207 | MobiDBLite | consensus disorder prediction | 56 | 88 | - | - | |
| Aed9g0731 | 207 | MobiDBLite | consensus disorder prediction | 129 | 149 | - | - | |
| Aed9g0731 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 159 | 197 | IPR001841 | - | |
| Aed9g0731 | 207 | PANTHER | OS01G0917900 PROTEIN | 18 | 207 | - | - | |
| Aed9g0731 | 207 | Pfam | Zinc finger, C3HC4 type (RING finger) | 156 | 201 | - | - | |
| Aed9g0731 | 207 | SMART | ring_2 | 159 | 196 | IPR001841 | - | |
| Aed9g0731 | 207 | MobiDBLite | consensus disorder prediction | 57 | 73 | - | - | |
| Aed9g0731 | 207 | CDD | RING-HC | 159 | 196 | - | - | |
| Aed9g0731 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 207 | IPR013083 | - | |
| Aed9g0731 | 207 | SUPERFAMILY | RING/U-box | 145 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed9g0731 | Aed-Chr9 | 5089764 | 5090387 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed9g0731 | 20 | 207 | C3H Transcription Factor Family | AT4G22250 | 53.365 | 6.18e-57 | 177 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed9g0731 | - | - | gmx:100804959 | 284.263 |
Event-related genes