Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0723 ATGGAGGGTAGTAGCAGCTCTAATGGCACTTCCTATTTGTTGGCTTTTGGGGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACCTCCCATCATCCTAATCCTAGTAATAATACTAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAATAACAGTACTGGAACTCCTTCTATCATGCTCCACAATAACCACAACACCAACAACAACACTGATGATGATAACAACAACAACCCCAACACCACCGGGTTAGGTTACTATTTCATGGAGAGCGACCACCCCCACCGCAACAACAACAACAACAACAACAATGGAAGCTCCTCTTCCTCTTCCTCTGCTGTCAAGGCCAAGATCCTGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCTCCTGAAGTGGTGGCAAGGTTAGAAGAATCATGTGCTTCTGCAGCGACTATGGCAGCAGGTGATGCAGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTTACCAAGTACGAGCAAGAACTCTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCACAAACTTTGGTAGCAATGAGGGTAGTGGTGATAGGAATAATGGATCGTCAGAAGAAGATGTTGATCTACAGAACATGATAGATCCCCAGGCAGAGGACAGAGAATTAAAGGGTCAGCTACTGCGAAAGTATAGCGGATACTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCGTCCGAATCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAGCGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTATTACATGGACACTGCTCTCGCCAATCCATTTCCCATGGATCTCTCCCATCCTATGCTCTAG 1140 0.4596 MEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHPNPSNNTNNNANTNCLFIPNCSNNSTGTPSIMLHNNHNTNNNTDDDNNNNPNTTGLGYYFMESDHPHRNNNNNNNNGSSSSSSSAVKAKILAHPHYHRLLAAYVNCQKVGAPPEVVARLEESCASAATMAAGDAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSTNFGSNEGSGDRNNGSSEEDVDLQNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDTALANPFPMDLSHPML 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0723 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 368 - -
Aed9g0723 379 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Aed9g0723 379 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Aed9g0723 379 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Aed9g0723 379 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Aed9g0723 379 SMART HOX_1 283 348 IPR001356 GO:0003677
Aed9g0723 379 PANTHER - 2 368 - -
Aed9g0723 379 CDD homeodomain 293 345 IPR001356 GO:0003677
Aed9g0723 379 Pfam KNOX2 domain 176 223 IPR005541 GO:0003677|GO:0005634
Aed9g0723 379 SUPERFAMILY Homeodomain-like 283 359 IPR009057 -
Aed9g0723 379 MobiDBLite consensus disorder prediction 68 122 - -
Aed9g0723 379 MobiDBLite consensus disorder prediction 228 247 - -
Aed9g0723 379 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Aed9g0723 379 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Aed9g0723 379 Gene3D - 286 348 - -
Aed9g0723 379 MobiDBLite consensus disorder prediction 68 93 - -
Aed9g0723 379 Pfam ELK domain 261 282 IPR005539 GO:0003677
Aed9g0723 379 SMART ELK_2 261 282 IPR005539 GO:0003677
Aed9g0723 379 MobiDBLite consensus disorder prediction 101 122 - -
Aed9g0723 379 Pfam KNOX1 domain 121 160 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0723 Aed-Chr9 5030173 5036268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0723 122 379 Homeobox Transcription Factor Family AT1G62360 80.682 2.17e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed9g0723 KNOX2 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0723 - - gmx:547796 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2528 6 26488786 26493087 Aed9g0723 9 5030173 5036268 PCT