Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0708 ATGGCCACTTTAACCACTACTCTTCTAGTAATATTCTCGTGCTTCCTAGTACCTACTACCTTAGCTTCAACACCGAATTATAGAGATTCAACAAAGGAGTTCAACGCCATCTCCCCTATTTCAAGCTACATCACCAAAACTAGCCCTGAGAATGTTGATGTCATGAACACAATAGACTCATGTTGGAGAGCCAAAACAAATTGGGCTTCAAACCGCCAATCCTTGGCTGATTGTGCAATTGGCTTCGGCAAAGACGCCATAGGAGGAAAGTTTGGTGACATATACCAAGTCATTGACCCTTCTGATGACCCTGTTGACCCAAAACCAGGCACACTCCGTTACGGTGCAATCCAAACGGAACCCCTTTGGATAACCTTCGCCAACGACATGGTCATCGCGCTGGAGAACGAGCTCATGGTGAATAGCTACAAGACCATTGATGGGAGAGGGGCAAAAGTTGAGATTGCAAATGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTCATCGTGCATGGAATTAGCATTCATGATTGCAAACCGGGTAAGGGTGGCATGGTGAGGAGCAGTGTTGAGCATGTTGGGTATCGTGAAGGGTCTGATGGTGATGGTGTTAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCGTTGATGTTATTCATGCCTCAACTGCTGTCACCATCTCTAACAATTACTTCACTCATCACGACAAAGTGATGCTGCTAGGACACAGCGATGAATACAGCGCGGATAGAGTAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCCCATGTAGTCAACAACCGGTACGATGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCAACCCTACCATTTTTAGTGAAGGGAACTACTTTATGGCTTCAAGTGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAACTAGTGAAAAGTGGAATAATTGGAAATGGAGAAGTTTAGGGGATGAATTTTTGAATGGTGCTTACTTTGTGCCATCTGGGTATGGAAGTTGCACGCCAATATATTCAGCTGCTCAAACTTTTATCGCGGCCAAAGCATCCATGGTGCCCTTATTAACTCTCAATGCAGGGCCATTGAATTGTGTTGTTGACAAAGCTTGTTAA 1209 0.45 MATLTTTLLVIFSCFLVPTTLASTPNYRDSTKEFNAISPISSYITKTSPENVDVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGDIYQVIDPSDDPVDPKPGTLRYGAIQTEPLWITFANDMVIALENELMVNSYKTIDGRGAKVEIANGACITIQGVSHVIVHGISIHDCKPGKGGMVRSSVEHVGYREGSDGDGVSIFASSNVWIDHCFLARCTDGLVDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADRVMKVTVAFNRFASGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSANPTIFSEGNYFMASSDSAAKQVTKRETSEKWNNWKWRSLGDEFLNGAYFVPSGYGSCTPIYSAAQTFIAAKASMVPLLTLNAGPLNCVVDKAC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0708 402 Gene3D - 55 395 IPR012334 -
Aed9g0708 402 SUPERFAMILY Pectin lyase-like 55 393 IPR011050 -
Aed9g0708 402 PANTHER PECTATE LYASE 27 401 - -
Aed9g0708 402 PANTHER PECTATE LYASE 18-RELATED 27 401 IPR045032 GO:0030570
Aed9g0708 402 SMART amb_all 129 326 IPR002022 -
Aed9g0708 402 Pfam Pectate lyase 137 320 IPR002022 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Aed9g0708 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0708 Aed-Chr9 4933696 4935241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0708 9 402 Polysaccharide Lyase AT4G22080 63.959 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0708 K01728 - gmx:100803229 731.48