Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0707 ATGGTCATTAGGCTCAAGAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCAAAAGTGGAGATAGCAAATGGGCCTTGCATTACTATACAAGGTGTTAGTCATGTTATCATACATGGCATTGGCATCCATGATTGCAAACCAAGCAAGGCGGGCCTTGTGAGGAGTACACCATCTCATCTTGGCCATCGTCAAGGCTCTGATGGGGATGGCATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGATGTTATTCATGCCTCAACTTCCATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTACTAGGACACAGCGACGAATACTCAGCAGATAAAATAATGAAAGTAACTATAGCCTTCAACCGATTTGCTAGTGGTCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACATGTGGTGAACAACAAATATGATGAGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTCTAAGTGAAGGGAACTACTATATAGCTCCGAATAACCATGACTCCAAACAGGTTACCAAGAGGGAAATGATGGGAAAATTGAAGAATTGGAAATGGAGATCTTCTAAGGATGCATTCTTAAACGGTGCTTATTTTGTTCCATCTGGGTATGGTAGTTGTGATCCATATTATTCGCCTACTCAGTATTTTACCGCTGCACCTGCTTCCATGGTGCCCGCAATAACTCTCAATGCAGGTCCCTTGCCTTGTGTTGTTGGTAAAGCATGTTAG 822 0.4185 MVIRLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGIGIHDCKPSKAGLVRSTPSHLGHRQGSDGDGISIFASSNVWIDHCFLARCADGLIDVIHASTSITISNNYFTQHDKVMLLGHSDEYSADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDEWKMYAIGGSSNPTILSEGNYYIAPNNHDSKQVTKREMMGKLKNWKWRSSKDAFLNGAYFVPSGYGSCDPYYSPTQYFTAAPASMVPAITLNAGPLPCVVGKAC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 244 267 IPR018082 -
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 174 193 IPR018082 -
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 214 238 IPR018082 -
Aed9g0707 273 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Aed9g0707 273 PANTHER PECTATE LYASE 1 272 - -
Aed9g0707 273 PANTHER PECTATE LYASE 18-RELATED 1 272 IPR045032 GO:0030570
Aed9g0707 273 Pfam Pectate lyase 7 191 IPR002022 -
Aed9g0707 273 SUPERFAMILY Pectin lyase-like 1 272 IPR011050 -
Aed9g0707 273 SMART amb_all 1 197 IPR002022 -
Aed9g0707 273 Gene3D - 1 266 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0707 Aed-Chr9 4930223 4931350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0707 1 273 Polysaccharide Lyase AT4G22080 69.963 2.71e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0707 K01728 - gmx:100799106 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0707 9 4930223 4931350 Aed9g0707 9 4930223 4931350 ECH