LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g0687	ATGGCTGAGGCTACGCAATCCAATGCTGAGTTGTTAGAGTGGCCAAAAAAAGATAAGCGCCGCTTCCTGCATGCTGTGTACCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACTGAATGTTTCGGGATGAAGCTTTTGAGGCAAAGAGATATTCCAGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAGCAATCCAATTTTGTTGTGGAATTAACTTACAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATCGCAACTCCAGATGTTTACAAGTTGGTTGAAGACATTCGGGCTAAGGGTGGAAATGTCACCAGGGAGCCTGGTCCAGTTAAGGGTGGGACATCTGTTATTGCCTTCGTGAAGGATCCTGATGGTTATGCTTTTGAGCTCATTCAAAGACCTTCAACTCCTGAGCCATTGTGCCAAGTAATGCTTCGCGTTGGTGATTTAGAGCGCTCGATTAAGTTTTATGAAAAGGCTTTGGGTTTGAGGGTGGTAAAGAAGACTGATAGACCTGAATACAAGTATACTATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACATATAACTATGGTGTCACAGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTTATCAACACAGTCACTCAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGACCAATTCCTGGCCTTAACACAAAGATCACTGCCTTCTTAGATCCTGATGGATGGAAAACTGTTTTGGTTGACAATCAAGATTTTCTGAAGGAACTGGAGTGA	864	0.4329	MAEATQSNAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRQRDIPEEKYANAFLGFGPEQSNFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNVTREPGPVKGGTSVIAFVKDPDGYAFELIQRPSTPEPLCQVMLRVGDLERSIKFYEKALGLRVVKKTDRPEYKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVINTVTQELGGKITRQPGPIPGLNTKITAFLDPDGWKTVLVDNQDFLKELE	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g0687	287	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	151	279	IPR037523	-
	Aed9g0687	287	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	20	149	IPR029068	-
	Aed9g0687	287	Pfam	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	154	273	IPR004360	-
	Aed9g0687	287	Pfam	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	23	142	IPR004360	-
	Aed9g0687	287	ProSitePatterns	Glyoxalase I signature 2.	88	100	IPR018146	GO:0004462\|GO:0046872
	Aed9g0687	287	Gene3D	-	1	147	IPR029068	-
	Aed9g0687	287	ProSitePatterns	Glyoxalase I signature 1.	154	175	IPR018146	GO:0004462\|GO:0046872
	Aed9g0687	287	Gene3D	-	148	287	IPR029068	-
	Aed9g0687	287	TIGRFAM	glyox_I: lactoylglutathione lyase	8	154	IPR004361	GO:0004462\|GO:0046872
	Aed9g0687	287	TIGRFAM	glyox_I: lactoylglutathione lyase	152	282	IPR004361	GO:0004462\|GO:0046872
	Aed9g0687	287	PANTHER	LACTOYLGLUTATHIONE LYASE	11	287	-	-
	Aed9g0687	287	PANTHER	LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN	11	287	-	-
	Aed9g0687	287	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	21	145	IPR037523	-
	Aed9g0687	287	CDD	GlxI_Ni	23	143	-	-
	Aed9g0687	287	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	152	279	IPR029068	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g0687	Aed-Chr9	4820301	4823344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g0687	154	278	Calmodulin-binding Proteins	AT1G08110	28.667	3.36e-11	60.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed9g0687	9	4820301	4823344	Aed9g0687	9	4820301	4823344	ECH
	Aed6g2507	6	26368641	26372920	Aed9g0687	9	4820301	4823344	PCT