Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0673 ATGATGCAGCAGCCAGGACCCGGCGGCATGGCTCCACCCAGCATGGGGCAGCAGGCACCGCAACAGTACCACCAGCAACAGCAGCAGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGGCCCAGGCGGCGCCGCCCATGTGGGCCCCCTCCGCCCAGGCTCCGCCGCCGCAGCAGCAGCAGCCTGCCAGCGCCGACGAGGTCCGAACCCTCTGGATCGGCGATCTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGCTTTGCTCATACTGGCGAGGTGACTTCTGTTAAAGTGATTCGAAACAAGCAAACCAGTCAATCGGAAGGTTATGGGTTTATTGAGTTTAATGGTCGTGCCGCAGCTGAGAGAATTCTTCAAACGTATAATGGGGCAATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCGGGTGAAAGGCGCGGCCAAGGCCAAGACGATTCTCCAGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTACCTCCTTCAAGAGACTTTTAGAGCTCGATATAATTCGGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGCCGGACCAAGGGGTATGGCTTTGTGAGGTTTGCAGATGAGAGTGAGCAAGTGAGGGCTATGTCTGAGATGCAGGGGGTTCTTTGCTCAACAAGACCTATGAGGATTGGACCAGCCAGTAATAAAACCCCTGCTACTCAGCCAAAAGGTCAGTTACCCATTATTTTTTGTGGCATTTTCTTTTCCGCCTACAGTTTCAAGAGCTGTGCTGAAGAGGCACTTCGGGTGTTAAATGGGACGCTGTTGGGTGGACAGAATGTTCGTCTTTCATGGGGCCGGAGTCCTTCAAACAAACAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGCGGCAGTGGTGGTGGTGGTGGTGCTTCTGGTGGAGGATATTATGGGTATGCTCAAGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCACCTCAGCAACAGCAGCAAATAGGATATAGTTGA 1110 0.5207 MMQQPGPGGMAPPSMGQQAPQQYHQQQQQQQQPYVMMPPQAQAAPPMWAPSAQAPPPQQQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNGRAAAERILQTYNGAIMPNGGQSFRLNWATFSAGERRGQGQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMSEMQGVLCSTRPMRIGPASNKTPATQPKGQLPIIFCGIFFSAYSFKSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGGGSGGGGGASGGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYPGYQPPQQQQQIGYS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0673 369 MobiDBLite consensus disorder prediction 39 57 - -
Aed9g0673 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 244 IPR000504 GO:0003723
Aed9g0673 369 SMART rrm1_1 166 240 IPR000504 GO:0003723
Aed9g0673 369 SMART rrm1_1 70 145 IPR000504 GO:0003723
Aed9g0673 369 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 250 - -
Aed9g0673 369 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 264 366 - -
Aed9g0673 369 SUPERFAMILY RNA-binding domain, RBD 162 301 IPR035979 GO:0003676
Aed9g0673 369 MobiDBLite consensus disorder prediction 349 369 - -
Aed9g0673 369 CDD RRM1_SECp43_like 70 150 - -
Aed9g0673 369 CDD RRM2_SECp43_like 164 243 - -
Aed9g0673 369 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 250 - -
Aed9g0673 369 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 264 366 - -
Aed9g0673 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Aed9g0673 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Aed9g0673 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Aed9g0673 369 Gene3D - 259 338 IPR012677 -
Aed9g0673 369 Gene3D - 12 160 IPR012677 -
Aed9g0673 369 MobiDBLite consensus disorder prediction 294 317 - -
Aed9g0673 369 MobiDBLite consensus disorder prediction 294 311 - -
Aed9g0673 369 SUPERFAMILY RNA-binding domain, RBD 45 149 IPR035979 GO:0003676
Aed9g0673 369 MobiDBLite consensus disorder prediction 15 37 - -
Aed9g0673 369 MobiDBLite consensus disorder prediction 1 66 - -
Aed9g0673 369 Gene3D - 164 240 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0673 Aed-Chr9 4699373 4712687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0673 71 246 Eukaryotic Initiation Factors Gene Family AT4G34110 26.136 5.82e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0673 - - gmx:100794675 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2489 6 26240258 26244787 Aed9g0673 9 4699373 4712687 PCT