Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0663 ATGGCGAACTTCACCTCTTACTCTTCATCTCTAACACACATTCCACCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCCGAAGACTCCTGCAGTATTTGCCTAGAGCCTTTCAACATTCATGACCCATCCACTGTTACCTGTTGCAGACATGAATATCATCTGCATTGCATCATTGAATGGTCACAAAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCGGTGGAAGATGAGAAACGCATGAGATCAAGAAACACAACTAATTCTCGCAGCTCCCTTCAACAGCTTAATGATGACCATGATGATTCTTGCTCAGATGACTCTGATTTTGATGATCAGATTATGAGGCGCCTAGTTGCTGCTGCTAGTAGAGCTCGTTTTGTTCAGAGACAGGAAAGGAAGAGATCACATGGTGCTGGTCCATCAGAGGTTCTTGGTGTTAACTCTTCCTTGCATGTATCTGGGGTGCAAACAACACTTACTACTTCGCCATCTGGGGGTAGTTCACCAGCTTCTGGTGTACCATCTACTGTTAACATTCAACCTCCAGCATTAAGTATTACTCCTGAGAGTGCAAGGAGACCAAACACTTCTGAGATGTTTTCCTTTCCCGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAGGTACGCGAGGCCTTAAAGAGAAGTTACTTGCTCATAATGTCTCCGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATCGCTGGAGTATCCCGGATGATTGAACGCCTTGATCTTAGCTCAAAACGGTCCAGTTCTCCTGTTATTCCAGTCCATGGTGGCATAACATCAGACTTACCTGAAGAAGGGAAATCTGTAGAAGAAAATGGCATCGGAGGTTCTCCTAGTAAAGAGAGTGGAGGTGCAGTTCATGATGTTAGTTCAGATGTTTCCCCACTTGTTACTAACATGCAATCTTTTCGAACGAAAAATCCTCATCCATTTGTTCAGAGTAGACATGACATGCTATGA 1086 0.442 MANFTSYSSSLTHIPPISAPSSSAPFDDSSEDSCSICLEPFNIHDPSTVTCCRHEYHLHCIIEWSQRSKECPICWQSLALKDPASQELLAAVEDEKRMRSRNTTNSRSSLQQLNDDHDDSCSDDSDFDDQIMRRLVAAASRARFVQRQERKRSHGAGPSEVLGVNSSLHVSGVQTTLTTSPSGGSSPASGVPSTVNIQPPALSITPESARRPNTSEMFSFPESFKSKFSAASARYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVSRMIERLDLSSKRSSSPVIPVHGGITSDLPEEGKSVEENGIGGSPSKESGGAVHDVSSDVSPLVTNMQSFRTKNPHPFVQSRHDML 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0663 361 MobiDBLite consensus disorder prediction 289 332 - -
Aed9g0663 361 MobiDBLite consensus disorder prediction 95 125 - -
Aed9g0663 361 MobiDBLite consensus disorder prediction 164 213 - -
Aed9g0663 361 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Aed9g0663 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 108 IPR013083 -
Aed9g0663 361 Pfam Ring finger domain 32 74 IPR001841 -
Aed9g0663 361 MobiDBLite consensus disorder prediction 143 213 - -
Aed9g0663 361 SUPERFAMILY RING/U-box 26 81 - -
Aed9g0663 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 340 - -
Aed9g0663 361 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 340 - -
Aed9g0663 361 SMART ring_2 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0663 Aed-Chr9 4642778 4645842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0663 28 82 C3H Transcription Factor Family AT4G00335 43.636 1.04e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0663 K19043 - gmx:100805449 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0663 9 4642778 4645842 Aed9g0663 9 4642778 4645842 ECH