Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0649 ATGTCTCACATAGCTGTCGAGAGGAACAGAAGAAGACAGATGAATGAACATCTCAAAGTGTTAAGATCTTTGACCCCTTGTTTCTATATCAAAAGGGGTGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTGAGCCCTGGCCCTGGCCCGAGTCCACGAACACTGCAGCCTGCAGCAACTACACACACACGAAGTGAGATTCCCGAATCTTGA 276 0.4457 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPGPGPSPRTLQPAATTHTRSEIPES 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0649 91 SMART finulus 4 55 IPR011598 GO:0046983
Aed9g0649 91 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Aed9g0649 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Aed9g0649 91 MobiDBLite consensus disorder prediction 58 91 - -
Aed9g0649 91 Gene3D - 1 65 IPR036638 GO:0046983
Aed9g0649 91 MobiDBLite consensus disorder prediction 75 91 - -
Aed9g0649 91 PANTHER TRANSCRIPTION FACTOR MUTE 1 85 - -
Aed9g0649 91 PANTHER TRANSCRIPTION FACTOR FAMA 1 85 IPR044283 GO:0003700|GO:0010052
Aed9g0649 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0649 Aed-Chr9 4558207 4558951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0649 1 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 68.478 1.96e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g0649 HLH 8.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0649 - - gmx:100785890 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0649 9 4558207 4558951 Aed9g0649 9 4558207 4558951 ECH