Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0647 ATGACGGGGGAATCGGATCAAGAGTGGGCGATTCTGCTTCTCAAAGTTGTGTGTTTCTCGCAGAAGAAGAAACAATTATCTCCAAAACCGACCACCCTCACTCCCACCACCACCACCACCGCCAGCCCCTTACTATTACCATCCAGAATCCCACCCTCTACCACTACTACCACCACCGCAGCCGCAAGGTTACTTTCTTCCTTCCACAACCCCTTATGCTCCTCCTCCTCCTCCTCCGCCACCACAAAGCAATTCAAACTCGTTCTATTACTCCAACCCCAATTCCTACGGCACTCCCACTCTGGCCCCTCGCTTTCACTTCCAGCATTTCTACCAGCCCCAGCAACAGCCCGCCGTGTGGCCTGCCCCTCGTCCCGCTGCCCCCACCCCCCCCCCCCCGCCATCACCCCTCCTCCCTACGTCGACCACCAAACCGCGAAGAAGATAAGGACCTATGTCAACGTCCATAAAGACACCCTGTGCCTCGAGGTTGACGAGCAGAACCCCGATCATCATCTCCTTTCCTTCGTCTTCGATGCTGTCTACGATGGCAGCATTACTATCTTATACTTTGCCAAGGAGGAAGAAAAATGTAGTTTTGTTCCATTATATCCTGATGCACATCAGCTGGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCATCTGAAGATGTTTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACCTCAGAAGATGAAACTCCTGGTGATTCCTTGCTAAATGCATCCCCTCACATGCAAATAACTCAAGGTATCTTAGAGAAAAGTAATGGTGCTGGTTCTTTCCCAATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCATCTGCTGCTGATTTTAATGGCAATGATCCTGGGAAGGAGTGTGTCATATGCTTGACTGAACCAAAGGATACTGCCATCTTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAATGATCTGCGACAACAATCCAATAAATGCCCTTTATGCCGTCAGCCTATTGAGGAACTTATAGAGATCAAGGTGAACAGTGGCGATCAATGA 1176 0.4804 MTGESDQEWAILLLKVVCFSQKKKQLSPKPTTLTPTTTTTASPLLLPSRIPPSTTTTTTAAARLLSSFHNPLCSSSSSSATTKQFKLVLLLQPQFLRHSHSGPSLSLPAFLPAPATARRVACPSSRCPHPPPPAITPPPYVDHQTAKKIRTYVNVHKDTLCLEVDEQNPDHHLLSFVFDAVYDGSITILYFAKEEEKCSFVPLYPDAHQLVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSSEDVFPLVICAETSLKTSEDETPGDSLLNASPHMQITQGILEKSNGAGSFPIKVVRQILWIDGVRYELRELYGIGSSSAADFNGNDPGKECVICLTEPKDTAILPCRHMCMCSDCANDLRQQSNKCPLCRQPIEELIEIKVNSGDQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0647 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 385 IPR013083 -
Aed9g0647 391 PANTHER MAHOGUNIN 38 390 IPR045194 GO:0061630
Aed9g0647 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 38 390 - -
Aed9g0647 391 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 335 375 IPR045195 -
Aed9g0647 391 ProSiteProfiles Zinc finger RING-type profile. 336 375 IPR001841 -
Aed9g0647 391 SMART ring_2 336 374 IPR001841 -
Aed9g0647 391 SUPERFAMILY RING/U-box 335 381 - -
Aed9g0647 391 Pfam Zinc finger, C3HC4 type (RING finger) 334 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0647 Aed-Chr9 4518252 4523716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0647 140 391 C3H Transcription Factor Family AT3G06140 61.569 7.50e-108 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0647 - - gmx:100786054 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0647 9 4518252 4523716 Aed9g0647 9 4518252 4523716 ECH