Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0628 ATGGCTTCTCTCAGAAACCTAAATTCTAAGCGCCTCCTTTTCTCTTTGCATTTCACTAGTGCTTACCGTGCACTCTCTCGTGGAACTTGCACCACTTTCCAAAACTGCAATGCACCTCCTTTGGATCTCGTTTCTCTACGGAGATCCTTAGCCACTTTCGCTCGAACAAAGCCTCATCTTAACGTGGGCACAATTGGGCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACCAAGGTGTTAGCTGAAGAAGGTAAAGCCAAGGCCATCGCCTTTGAGGACATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCGACTGCACATGTAGAGTATGAGACATCAAAGAGACACTATGCTCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCCCAAATGGATGGTGGAATTCTTGTGGTTTCTGCCCCAGATGGGCCAATGCCTCAAACAAAGGAGCATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTGAATAAGGTTGATGCTGTTGATGATCCAGAGTTGCTTGAACTTGTGGAAATGGAGCTTCGCGAACTGCTTAGTTTCTACAAATTTCCAGGGGATGAGATCCCAATTGTGCGTGGTTCAGCACTGTCTGCATTGCAGGGGACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCTGATCCTGTGCGGCAACTTGACAAGCCTTTCTTAATGCCAGTAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGCGACTGGTCGTGTTGAACAAGGTACCATCAAAGTAGGTGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTGACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTCCTTCTACGTGGTCTTAAGCGTGATGATGTACAGCGGGGAATGGTGGTGACCAAGCCTGGTGCATTTAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGTCATACTGCTTTTTTCTCCAACTATAAGCCGCAGTTTTACTTGAGGACTGCTGATATTACCGGAAAGGTGGAATTACCTGAAGATGTTAAGATGGTTATGCCTGGTGATAACGTGACTGCAACTTTTGAGCTGATGTCACCTGTTCCTCTTGAAATAGGTAGGTTGGATCCTAGAAGTGAGTGTGACATAGATCATAAAGATGCTGCATTATCTACAATAGGACAAAGATTTGCTTTAAGGGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATGGTCTAG 1401 0.4475 MASLRNLNSKRLLFSLHFTSAYRALSRGTCTTFQNCNAPPLDLVSLRRSLATFARTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEDIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPVEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGAFKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVELPEDVKMVMPGDNVTATFELMSPVPLEIGRLDPRSECDIDHKDAALSTIGQRFALREGGRTVGAGVVSKVMV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0628 466 PRINTS GTP-binding elongation factor signature 105 113 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 PRINTS GTP-binding elongation factor signature 141 152 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 PRINTS GTP-binding elongation factor signature 125 135 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 Gene3D - 49 252 IPR027417 -
Aed9g0628 466 CDD EFTU_III 351 461 - -
Aed9g0628 466 Hamap Elongation factor Tu [tuf]. 48 466 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed9g0628 466 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 98 113 IPR031157 -
Aed9g0628 466 PANTHER ELONGATION FACTOR TU-RELATED 443 465 - -
Aed9g0628 466 PANTHER ELONGATION FACTOR TU-RELATED 30 424 - -
Aed9g0628 466 PANTHER ELONGATION FACTOR TU 30 424 - -
Aed9g0628 466 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 253 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 Gene3D Translation factors 255 385 - -
Aed9g0628 466 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 354 464 IPR009001 -
Aed9g0628 466 Pfam Elongation factor Tu C-terminal domain 351 464 IPR004160 -
Aed9g0628 466 PANTHER ELONGATION FACTOR TU 443 465 - -
Aed9g0628 466 CDD EF_Tu 58 252 IPR041709 -
Aed9g0628 466 Pfam Elongation factor Tu domain 2 274 345 IPR004161 GO:0005525
Aed9g0628 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 275 IPR027417 -
Aed9g0628 466 Gene3D Translation factors 389 465 - -
Aed9g0628 466 Pfam Elongation factor Tu GTP binding domain 57 250 IPR000795 GO:0003924|GO:0005525
Aed9g0628 466 CDD EFTU_II 260 348 IPR033720 -
Aed9g0628 466 TIGRFAM EF-Tu: translation elongation factor Tu 50 423 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed9g0628 466 TIGRFAM small_GTP: small GTP-binding protein domain 61 196 IPR005225 GO:0005525
Aed9g0628 466 SUPERFAMILY Translation proteins 254 349 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0628 Aed-Chr9 4374777 4378882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0628 53 464 Eukaryotic Initiation Factors Gene Family AT5G60390 29.867 4.59e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0628 K02358 - gmx:102667962 800.045