Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0622 ATGGACGAAGACCACAACTCATCATTTGAAAGAAGTATATTTATGTGTTGGGTGTTGGTATCACTAATATTGTATTGGATATACATGCGGAATGACTCACGTGATCATGACGGGTCGGCGGCGGCGATGGCAACGGCGAGGACGAGAACCACGAGACGATCTCAAAATACTACTACACGAGAAAGTACTTCTCTTCCATCAACAACAAGAACAAGGATTCCCATGGTGATGACTAGAGTAGGGGTTGAAAGGGAATTGCATTTGCAAAACATGCTCGCATTTTCTTCAATCCCCAGATATGCGTCTAGGGTAGCTATGAGATACTTGCCTCCTATTAAATGCTTTCGTGGGGATGATGATGCCACTGAGTGTCCTATTTGCATGGAAGAATTTAAGAACGGGGAATTGATTCAACCCTTTGGAGTTTGTGTCCATCAATTTCATTCCTCTTGCATTAATGCTTGGTTGCTCAGTGGAAAAACCACTTGTCCCATTTGTCGTAAGGAATTGTCAACCACTCACTACTAG 528 0.4318 MDEDHNSSFERSIFMCWVLVSLILYWIYMRNDSRDHDGSAAAMATARTRTTRRSQNTTTRESTSLPSTTRTRIPMVMTRVGVERELHLQNMLAFSSIPRYASRVAMRYLPPIKCFRGDDDATECPICMEEFKNGELIQPFGVCVHQFHSSCINAWLLSGKTTCPICRKELSTTHY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0622 175 Pfam Ring finger domain 123 167 IPR001841 -
Aed9g0622 175 SUPERFAMILY RING/U-box 123 172 - -
Aed9g0622 175 SMART ring_2 124 166 IPR001841 -
Aed9g0622 175 PANTHER OS06G0666500 PROTEIN 101 170 - -
Aed9g0622 175 ProSiteProfiles Zinc finger RING-type profile. 124 167 IPR001841 -
Aed9g0622 175 MobiDBLite consensus disorder prediction 40 69 - -
Aed9g0622 175 SMART FANCL_C_2 120 175 - -
Aed9g0622 175 MobiDBLite consensus disorder prediction 44 69 - -
Aed9g0622 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 173 IPR013083 -
Aed9g0622 175 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 101 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0622 Aed-Chr9 4318112 4318639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0622 118 171 C3H Transcription Factor Family AT2G17450 44.444 2.03e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0622 - K22378 aprc:113865236 121.324