Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0608 ATGATGGCGGACGCGGGATTCGATAACCCCTACCTCTTGGAAGATGAAGGAGACGTTGCCGATGATGATAAGCTCTGCATCGATCTGGACACCATTATGAGTGTTCTCGACGAGGATACCGATCCTTCTGAGAGTAGTCCTGAGGATTTTTCATTGAAAAACATTTCTCCTGGTGAATCTGGCATCCATGATAGTTTTCTACTTCAAAATGGTTGTAGTCAGTTCTGCTCAGAGGGGATAGATTCTGAGATCAGGGGCTTAACTAGTTTATGTGATTCTGCAGGGAATTCCATCCTTGAATGTGAACATGAAAACTGTGGGCCTTCGTCACAGACTTTTTCTTCCCCAAATGCTCTTGCTGGTGGTTACAAGGACTCCTCTGTGGTTGAAAGTGATGAAATTTGCTTCACAGAAACGACAGGACTTTCTAATTGTGAGATGCCTGCTTACATTGCAGACAGAAGGTTCCCTGTTCCTGAAGCAAATTCAAGCAATGTAGCTGTCTGTGGAGATAATTTGAACTTGACTTTGTGGAAGTGTGAAAATGAAAGCCAAACCAAGCATATAGGATATGGTGCACAAACTGAACATGCTTCACTTGGCTCTATCAATGGTAATATTGATGTAAATTTTGAAGATTATGAAACCTATATGAAAGACATTATTAGACTTTCTGGTAAACAGGAAAATGACTCATGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATAGATCTTCACATGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTACCAAAATATGGATGACAGACCTGTTGTTGCCAACAGTTCTGGTTGTTTGTCTAATGGTGTTTATCCTCATGTGCGGAAAAATGAAGAAATGATGAGGAACATGAAGGTTGCTAGAATGGAGTTATTTGCTGATACAAGTAGTGGCATGCATTCCAGCATTAATGGTGGGATACCTTTCGAAGATACTCCATTTATGTTTGCCGATAGTAAATATGCATCATCTTATCCTGGTAATGTTCTCTTTGAAGACAATGCATCAGTGCAACTTTCAACTCGTGCTTCATATATTTCAAGTGAAGGTCAGTCACTTAATGTCAAAGCCGAAAGAGATGATCTGATTATGCCTTACCAAAACTCTGTTCACGGTGATGATGCTGATTTCAATGTAGGTCAAGAGATGAAACAACTACCTGGTATTTTCCCTGCTGTTAGATGTCAGGGTAGTGATTTCTTCAAGAGTAAGGATAGGGTTACAATTGCAACAACTCAGAAAGCCAAATATTATCAAGATGGTATTGATGGAGCTGCCAATAACTTTCCAGGAAACATGGGAAGTTTGAATTTAAAACCATTAGACAAATCATTATATAATGCCCAGGCATCAATTGCCATTGGGAAGCAGTATAATTGTTTTATGAGTGAAGGAGAGGGCAAATCAATTCAACATAGAAGTATTGATTCTCAGCTAAGTATTGAGAGATCCCATATTGAGGATGATTCTGATCTTTGCATTATTGAAGACATGAGTCACCCTGCACCTATAAGTCGATCAGCAGAGCTTGGGAATTCCCTTAATGCATCACAATCTTCTAGAGGTGGTTATACTCAGACTCAGTCTATGGTGGGAAGTATGAGGCCCAAGGCACGTGACGAGCAGTACATATTACGAGTTGCGTTGCAGGATCTATCCCAACCGAAGTCAGAGATTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCGACCATTGCTTTAATATTGAAGGAAAGACCTTCATTGCTGAATAAGTGCAACAATGCCCAAAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGCATAGTGAAGAACAAACCTAATATGTGTCAGGATTTGTCTAGTAGAAATCCAAACAAGAACATGAATTTGTTGGTGCATGCAAAGGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTAATGTATCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTTCCTAAACAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAGTATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAGAAGTGGCAAGAAGGGATTGGATGGTGCAATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGTTACTTTAGATTTTTAAGATACGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACCATAATGTTACGTCGGACAAAAGGCACACTTCTTGACGGGGAGCCTATCATCAACTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCATGTGATCATCCTCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAAATGGCAAAGAAGCTTCCTCAGGAAAAACAACTATCTCTTCTAAAATGTTTAGAGGCATCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCAACAAACTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGTCACACTGAATAGTTCTTTTTCTGATCCGGCTTGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGACTCAGCCATACGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCGTTGTCTAAACCACAATACTGTGCTTCCCAAAACAATGTGCAGAGCACTTCTGGGGAAAGTACTGATGGGCTTGGTATCTCATCTAGTGCTGATGGAATGAAATCCTTAAATGAAATTCCTGTGAATCAAAATGTGTTTGAGGAGAGAAGCTCTAATAATTCAGTTGGTGTTGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTACTTGAAGCATGTCTCAAGAGTTCTTCGATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACCGAGCACATCGAATTGGACAGACTCGTCCTGTCACAGTTTTACGGTTAACTGTTAAAGATACAGTTGAAGATCGTATCTTAGCTCTGCAGCAAAAAAAGCGGAAAATGGTTTCATCTGCCTTTGGAGAGGATGGAAGTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 4047 0.4082 MMADAGFDNPYLLEDEGDVADDDKLCIDLDTIMSVLDEDTDPSESSPEDFSLKNISPGESGIHDSFLLQNGCSQFCSEGIDSEIRGLTSLCDSAGNSILECEHENCGPSSQTFSSPNALAGGYKDSSVVESDEICFTETTGLSNCEMPAYIADRRFPVPEANSSNVAVCGDNLNLTLWKCENESQTKHIGYGAQTEHASLGSINGNIDVNFEDYETYMKDIIRLSGKQENDSCTSFEMSFVDADRSSHVATSTDSSICQGSNVPNDFSDYYPSLNCYQNMDDRPVVANSSGCLSNGVYPHVRKNEEMMRNMKVARMELFADTSSGMHSSINGGIPFEDTPFMFADSKYASSYPGNVLFEDNASVQLSTRASYISSEGQSLNVKAERDDLIMPYQNSVHGDDADFNVGQEMKQLPGIFPAVRCQGSDFFKSKDRVTIATTQKAKYYQDGIDGAANNFPGNMGSLNLKPLDKSLYNAQASIAIGKQYNCFMSEGEGKSIQHRSIDSQLSIERSHIEDDSDLCIIEDMSHPAPISRSAELGNSLNASQSSRGGYTQTQSMVGSMRPKARDEQYILRVALQDLSQPKSEISPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSLLNKCNNAQKSELETLNLDADDDQLPENGIVKNKPNMCQDLSSRNPNKNMNLLVHAKGRPSAGTLVVCPTSVLRQWAEELHNKVTCKANLSVLMYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAVSSKKRKCPPSSRSGKKGLDGAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIINLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKQLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKTRLSMSSVFSKVTLNSSFSDPACDNLPDYSGCEVEESEFCSQTQPYDSSKIKAALEVLQSLSKPQYCASQNNVQSTSGESTDGLGISSSADGMKSLNEIPVNQNVFEERSSNNSVGVGEKAIVFSQWTRMLDLLEACLKSSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVSSAFGEDGSGGRQSRLTVDDLKYLFMM 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0608 1348 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 612 880 IPR014001 -
Aed9g0608 1348 SMART helicmild6 1207 1290 IPR001650 -
Aed9g0608 1348 Gene3D - 693 781 IPR038718 -
Aed9g0608 1348 Gene3D - 803 931 IPR038718 -
Aed9g0608 1348 Pfam Zinc finger, C3HC4 type (RING finger) 1034 1070 IPR018957 GO:0046872
Aed9g0608 1348 SMART ring_2 1034 1072 IPR001841 -
Aed9g0608 1348 CDD DEXDc_SHPRH-like 597 918 - -
Aed9g0608 1348 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 527 1347 - -
Aed9g0608 1348 SMART ultradead3 593 895 IPR014001 -
Aed9g0608 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 918 IPR027417 -
Aed9g0608 1348 Pfam Helicase conserved C-terminal domain 1191 1290 IPR001650 -
Aed9g0608 1348 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 527 1347 - -
Aed9g0608 1348 MobiDBLite consensus disorder prediction 773 794 - -
Aed9g0608 1348 ProSiteProfiles Zinc finger RING-type profile. 1034 1073 IPR001841 -
Aed9g0608 1348 MobiDBLite consensus disorder prediction 542 560 - -
Aed9g0608 1348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1027 1085 IPR013083 -
Aed9g0608 1348 MobiDBLite consensus disorder prediction 773 807 - -
Aed9g0608 1348 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1175 1343 IPR001650 -
Aed9g0608 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 926 1347 IPR027417 -
Aed9g0608 1348 CDD SF2_C_SNF 1193 1300 - -
Aed9g0608 1348 Pfam SNF2-related domain 617 995 IPR000330 GO:0005524|GO:0140658
Aed9g0608 1348 Gene3D - 933 1347 IPR027417 -
Aed9g0608 1348 Gene3D - 568 661 IPR038718 -
Aed9g0608 1348 MobiDBLite consensus disorder prediction 542 562 - -
Aed9g0608 1348 ProSitePatterns Zinc finger RING-type signature. 1049 1058 IPR017907 -
Aed9g0608 1348 SUPERFAMILY RING/U-box 1031 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0608 Aed-Chr9 4218920 4228592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0608 484 1347 RAD5 or RAD16-like Gene Family AT1G61140 60.835 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed9g0608 SNF2_N 7.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0608 - - gmx:100805307 2199.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0608 9 4218920 4228592 Aed9g0608 9 4218920 4228592 ECH
Aed10g1939 10 23608201 23616823 Aed9g0608 9 4218920 4228592 PCT