Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0570 ATGGCATTTCAGCACTACATTTCCCGGGATTTGAAAAGCATCACAAATGCCGTGACTGAGGCTGAAAAGTCCAATGATTGTTTTGATTGCAATATCTGCTTAGACTTTGCACATGAGCCAGTGGTGACCCTATGTGGGCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCAATGTCCGAAGTGATTCTCTTGCACCTGATGAGCATCCACGATGCCCTGTTTGCAAGGCTGATATATCAAATAGCACAATGGTACCACTCTATGGCCGTGGCAATGCCACAGCTGAAGGCAAAACATCATCTTGTGATGTTTTTATACCACCAAGACCACCTGCTTCATGTGCTCAAGCCCTTTTGGCAACATCATCTCAAAGGGGTCAGCACCTTCCATATCGTAATCCTTATCAGGGTGCTCACTACTTCAACAACTCTCCATACCAAGAAGAGGATGATGATGTCAATCTTGGATCCCACCACCATCGCCACCGCCACCCTGTGACTGGGATGTTTGGGGAGATGGTTTATGCCAGAGTTTTTGGCAACCCTGAAAATTTGTATGCATACCCGAATTCTTATCAGCTGATGGGAAGTGCTACCCCTCGTTTGAGAAGGCAAGAGATGGAGGCACATAAATCTTTGAACAGAATTTCTATTTTTCTCTTTTGCTGCTTCCTTCTTTGTCTTGTTGTCTTCTAA 699 0.4549 MAFQHYISRDLKSITNAVTEAEKSNDCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLNVRSDSLAPDEHPRCPVCKADISNSTMVPLYGRGNATAEGKTSSCDVFIPPRPPASCAQALLATSSQRGQHLPYRNPYQGAHYFNNSPYQEEDDDVNLGSHHHRHRHPVTGMFGEMVYARVFGNPENLYAYPNSYQLMGSATPRLRRQEMEAHKSLNRISIFLFCCFLLCLVVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0570 232 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Aed9g0570 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed9g0570 232 SUPERFAMILY RING/U-box 25 90 - -
Aed9g0570 232 SMART ring_2 30 76 IPR001841 -
Aed9g0570 232 CDD RING-HC_AtRMA_like 28 78 - -
Aed9g0570 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 232 - -
Aed9g0570 232 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Aed9g0570 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Aed9g0570 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0570 Aed-Chr9 3993010 3993708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0570 6 218 C3H Transcription Factor Family AT4G27470 38.839 7.10e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0570 K10666 - gmx:100816864 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1897 10 23239441 23240202 Aed9g0570 9 3993010 3993708 PCT