Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0560 ATGGAGAACAACCCTAGTTCATCAAGATCACTTGACAGAAAATTCATTGAAAGGAATAGAAGAAATCAAATGAAAGCTCTCTTCCGCAAACTCCACTCTCTTGTGCCTCATCAAAGATCAAAGGAGGCCACTTTACTGCCAGATCAGCTAGAAGAAGCCACAGACTACATAAAGAAATTACAAATGAATGTGGAGAAAATGAAGGAGAAGAAGAACATGCTACTGGGAAGGAGCGTGGGGTTAAAATGTCCACGGATTGAGATCCAACAAATGGGTTCAGCCTTGGAGGTTGTTCTAATAACCGGGTTGGATTCACAGTTCATGTTCAGTGAAACCATTCGTGTTCTTCACGAAGAAGGAGTAGATGTTGTTAACGCCACTTATAAAGTTATTCAAGATGCAGTTTTCCATTCAATACACTGTCAGGTCAGCTACAAATATCCAAACGCTAATAATTCATATATATATATAACCAGAAAAAATTCTAAATGGTTAAGGAGTACTATGTATATATACTTCCAATCAATTTTGTAA 534 0.3745 MENNPSSSRSLDRKFIERNRRNQMKALFRKLHSLVPHQRSKEATLLPDQLEEATDYIKKLQMNVEKMKEKKNMLLGRSVGLKCPRIEIQQMGSALEVVLITGLDSQFMFSETIRVLHEEGVDVVNATYKVIQDAVFHSIHCQVSYKYPNANNSYIYITRKNSKWLRSTMYIYFQSIL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0560 177 Pfam Helix-loop-helix DNA-binding domain 15 61 IPR011598 GO:0046983
Aed9g0560 177 Coils Coil 50 77 - -
Aed9g0560 177 Gene3D - 3 89 IPR036638 GO:0046983
Aed9g0560 177 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 152 IPR015660 GO:0003700|GO:0006357
Aed9g0560 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Aed9g0560 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 80 IPR036638 GO:0046983
Aed9g0560 177 PANTHER TRANSCRIPTION FACTOR BHLH162 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0560 Aed-Chr9 3917935 3918730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0560 3 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.679 6.10e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g0560 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0560 - - gmx:100784418 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1886 10 23167229 23167969 Aed9g0560 9 3917935 3918730 PCT