Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0556 ATGGCCACGCCTCCTTTTGATCGCTGGGACGCTGATAAAATACTTCGAGTATATTTGCATGATTATATGATCAAAAGGGGAATGCACAACGCCGCTGAGATTTTCAAGAAGGAAGCACAAGTTCCCGATCACCCTATGGATTCCTGCATGAATGGTGGTCTATTTTCTATGAGGTATTTGCCTCTCGACATGGGAAGGACCAAACGACTACTGGGTCAGGGTCCTCTAGTCCCAATGATGACACATAATGCAAGGTCTAATGCCCCTCCTAGAATCCCTCAAATATCAATGAGTGAGCAGAGAACTCCACAATTTCAAGTCAACTCCAGCTTTAACAACATGATGGCTCAACAAGCCGTGCGTGTAATACCTTCAACAATGTACAATAAAGAAGAGCATCTTGAACCAAGTTTTCATGATCTTATAAAAAATAACCCGACGTTCTTGTCAAGGACTAGTTCAACTTATCCACCGCAAAATGTAGGCATGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTGGAATTGGCATGAGTGTGGAGAGGGATATACCTAGGGACTCGCTGAATGTAATGCAAAAAACAATGCTTCCTTTAGATGGACCTCATGAAACAAAAACCAATGAAGCTCTCAACATAGTGCCACTAAATGGATGGCCAATAAATTACCAAGTACTGACTTCACCTTTTCAAACACCAAATTGTCGACAGAAGTGTCAAATGTTGAAAACACAAAATCAGGATGCAGTCCTTGCTCAAGCAAGTGCAGGTACTTCTAAAAATCAGACGTCCACTGTTCCTGAAAACTCTAGCAAAAGCAATACTACGAAGATTTCTGAGACTGAATCAAGTGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAATATCAACACCAGCAGGATCAACAAATGCAGATTCAGTTCCAGAATAAGAACAGAAAAAGAAAGACAACAGAATCAATAAGACCTGGAGAAAGTGCCCGGAACTGTGAGGATATGGCCGATGGAAAACCTATGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAACACGCTGATCATAAAATTGCGCCCTTCAGCAATCTGAAACGAACTTCAGCATGCAGAAATGAAAAGAAAGGTTTTTCATTCGAAGAGGTTGGTTGTCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCATCGGATGGAAAACTCTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTGATTGTGTAACTACTACAGAAACACATTCACTTCTTGTTACAGATGTTCGGTTTAGACCAGGTTCAACTTTCTTTGCAACTTCTTCGTTTGATAGATCTGTGAGACTATGGGATGCAGCCAGACCAACAAGATCCATGCTCCAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGCAATGATGTAATTCGATTGTGGGATATCAATCAGGGTGTATGCATGCATATCACTAAGGGAGGTAGTAAACAGGTCAGATTCCAGCCTTGTTTTGGGAAGTTTTTGGCTACTGCTACAGGAAATAGTATCAAAATATTTGATGTGGAGACTGACAGTCTTCTGTACAATCTAGAGGGACATGTTAAAGATGTTCTCTCCATTTGTTGGGATAAAAATGGAAATTACATTGCCTCTGTCAGTGAAGATAGTGCACGTATCTGGTCATCAGACGGAAAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCATATTTCATCCAGGATATCTTAACCTCTTAGTTGTTGGTGGTTATCAGTCCCTGGAATTGTGGAGTCCCAGTGAGAGCAGTAAAACATGGGCTGTTCCAGCTCACAAGGGATTAATTGCTGGACTGGCAGATTCTCCCGAAAATGAAATGGTTGCGTCAGCTAGCCATGATCACTGCGTGAAGCTATGGAAATGA 2010 0.4119 MATPPFDRWDADKILRVYLHDYMIKRGMHNAAEIFKKEAQVPDHPMDSCMNGGLFSMRYLPLDMGRTKRLLGQGPLVPMMTHNARSNAPPRIPQISMSEQRTPQFQVNSSFNNMMAQQAVRVIPSTMYNKEEHLEPSFHDLIKNNPTFLSRTSSTYPPQNVGMQAQKQVFKDSGIGMSVERDIPRDSLNVMQKTMLPLDGPHETKTNEALNIVPLNGWPINYQVLTSPFQTPNCRQKCQMLKTQNQDAVLAQASAGTSKNQTSTVPENSSKSNTTKISETESSDKDKQMINQMITTVEYQHQQDQQMQIQFQNKNRKRKTTESIRPGESARNCEDMADGKPMDENVESFLSLENEHADHKIAPFSNLKRTSACRNEKKGFSFEEVGCLHSSKSKVLSSHFSSDGKLLASAGHEKKVFIWNMENFDCVTTTETHSLLVTDVRFRPGSTFFATSSFDRSVRLWDAARPTRSMLQLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWDINQGVCMHITKGGSKQVRFQPCFGKFLATATGNSIKIFDVETDSLLYNLEGHVKDVLSICWDKNGNYIASVSEDSARIWSSDGKCISELHSTGNKFQSCIFHPGYLNLLVVGGYQSLELWSPSESSKTWAVPAHKGLIAGLADSPENEMVASASHDHCVKLWK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0556 669 ProSitePatterns Trp-Asp (WD) repeats signature. 493 507 IPR019775 -
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 510 - -
Aed9g0556 669 CDD WD40 384 669 - -
Aed9g0556 669 Pfam WD domain, G-beta repeat 637 669 IPR001680 GO:0005515
Aed9g0556 669 Pfam WD domain, G-beta repeat 425 462 IPR001680 GO:0005515
Aed9g0556 669 Pfam WD domain, G-beta repeat 551 586 IPR001680 GO:0005515
Aed9g0556 669 Pfam WD domain, G-beta repeat 472 506 IPR001680 GO:0005515
Aed9g0556 669 Pfam WD domain, G-beta repeat 393 420 IPR001680 GO:0005515
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 637 669 - -
Aed9g0556 669 Pfam LisH 20 39 IPR006594 GO:0005515
Aed9g0556 669 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 669 IPR044716 GO:0003714
Aed9g0556 669 MobiDBLite consensus disorder prediction 254 287 - -
Aed9g0556 669 SMART WD40_4 509 545 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 423 462 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 548 586 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 588 627 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 628 669 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 466 506 IPR001680 GO:0005515
Aed9g0556 669 SMART WD40_4 381 420 IPR001680 GO:0005515
Aed9g0556 669 Gene3D - 360 521 IPR015943 GO:0005515
Aed9g0556 669 Gene3D - 522 669 IPR015943 GO:0005515
Aed9g0556 669 MobiDBLite consensus disorder prediction 312 331 - -
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 669 IPR001680 GO:0005515
Aed9g0556 669 SUPERFAMILY WD40 repeat-like 382 669 IPR036322 GO:0005515
Aed9g0556 669 MobiDBLite consensus disorder prediction 254 277 - -
Aed9g0556 669 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Aed9g0556 669 MobiDBLite consensus disorder prediction 315 331 - -
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 462 - -
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 429 IPR001680 GO:0005515
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 462 IPR001680 GO:0005515
Aed9g0556 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 515 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0556 Aed-Chr9 3882309 3889911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0556 406 585 U-box Gene Family AT2G33340 25.668 1.52e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0556 - - gsj:114387334 1118.99