Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0555 ATGAAGTTCAATATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATGACGACCTGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCATTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGGACTCCTTGTTTCCGTGGATACGGAAGGCGCAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCCGACCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGAAGATGATTTACCAGGCCTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAAATTCGCAAGCTGTTCAACCTGTCCAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGAAGAACATTTACAAATAAAGCTGGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCTTGACCCTACAAAGAAAGAGAGCAAGAATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAATACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGAACGCCGCAGTGAGAGCTTGGCTAAGAGAAGGTCAAGGATTTCCAGTGCTACTAAACATGCTGTCCCAGAATAA 750 0.4693 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGEDDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSRISSATKHAVPE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0555 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 - -
Aed9g0555 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Aed9g0555 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed9g0555 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 IPR001377 GO:0003735|GO:0005840|GO:0006412
Aed9g0555 249 Coils Coil 189 216 - -
Aed9g0555 249 Gene3D - 133 234 - -
Aed9g0555 249 MobiDBLite consensus disorder prediction 219 237 - -
Aed9g0555 249 MobiDBLite consensus disorder prediction 219 249 - -
Aed9g0555 249 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Aed9g0555 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0555 Aed-Chr9 3868356 3870808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0555 1 247 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.660 3.10e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0555 K02991 - gmx:100804076 435.647