Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0551 ATGGACGAATTAAGTTGGAGTGAGGGAAAAAGGAGCATGAATTACAAAGAGGATGAATACGAAGAAGAGGAGGAAGAGGAGGAGTATGGAGAAGAAGATGGTAGGAAAAAGAGGGTGGTGAGTAGTAATAGTAAGAGGTCAGGGTCCAAAGCTGGAGGGTCATCGGTGGCACCATCATGCCAAGTGGATGGTTGTAACGCTGATCTAAGTGATGCTAAGCCCTATCATAGGCGTCACAAGGTTTGTGAGTATCATGCCAAGGCTCCTGCCGTACTCATTGGAGACCAGCACCAAAGGTTTTGCCAACAATGTAGTAGGTACGCACGTTCCATGAGCTATCAGAATTCGATGACTCAAAGAGGAGTTGCAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATATCACGGACTTTGATGAGTTTGAGTTGGACAACAATTAA 459 0.4553 MDELSWSEGKRSMNYKEDEYEEEEEEEEYGEEDGRKKRVVSSNSKRSGSKAGGSSVAPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIGDQHQRFCQQCSRYARSMSYQNSMTQRGVAEDVWLDIMRGVAKMHLNITDFDEFELDNN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0551 152 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 107 - -
Aed9g0551 152 SUPERFAMILY SBT domain 58 108 IPR036893 GO:0003677|GO:0005634
Aed9g0551 152 MobiDBLite consensus disorder prediction 44 61 - -
Aed9g0551 152 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 107 IPR044817 GO:0003677
Aed9g0551 152 MobiDBLite consensus disorder prediction 1 63 - -
Aed9g0551 152 MobiDBLite consensus disorder prediction 1 17 - -
Aed9g0551 152 Gene3D - 50 149 IPR036893 GO:0003677|GO:0005634
Aed9g0551 152 Pfam SBP domain 60 111 IPR004333 GO:0003677
Aed9g0551 152 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0551 Aed-Chr9 3838550 3840284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0551 50 107 SBP-box Gene Family AT2G33810 60.345 6.13e-22 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed9g0551 SBP 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0551 - - gmx:100817597 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0551 9 3838550 3840284 Aed9g0551 9 3838550 3840284 ECH
Aed1g0582 1 7282873 7285996 Aed9g0551 9 3838550 3840284 ECH
Aed10g1873 10 23070300 23072295 Aed9g0551 9 3838550 3840284 PCT