Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0546 ATGTCTCTCCCCGATTCTCCCGTCGCCGACGATGTCGAAACCGATCCATCGCTTGACGAAGAAGAAGAAGAAGTGGAGGAGGAAGAAATAGAGGAGGAGGAGGAAGAAGTCGAAGAGGAGGAGGAGGAAGAAGAAATTGAAGAGGAGGAGGAGGAAGAAGAAGTCGAAGAGGAGGAGGTCGAGGAAGAAGAAGAAGAAGTGGAGGAGGAGGAAGTAGAAGTAGAAGTAGAAGAGGAAGAGGAAGAGGAGGAGGAAGAAGTAGAAGTAGAAGTGGAAGAGGAAGAGGAAGTAGAAGAGATAGAGGTAGAGGTAGAGGAGGAAGAAGAAGAGGGAGAACAAGGAGAAGAACAAGAATTAGAAGAGGAAGAAGTCGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGTCGAAGAGGAGGAGGAGGAGGAGGAAGTAGAAGAAGAGGAACAACAACAACAAGCAGTGGAGGAGAAGAAGGAAGAGCAACAACAAACAGAAGAAGCAGTGGAGAAGGAGGAACAACAAAAACAACCACAAGAAGAAGCAATGGAGGAGGACAAAACAGCGGTGCCAGGTTCTCCACTCAATGCCGATAGGGATCACGAAGATTCAAGCCAACATATGGAGTTTGAGGGGCAAGACAAAAACTTGGGACCAGTTTCTTCTGTGGCTGAAAACCCTGAAGTAATGCCACTGTCTAGTATGCATTGCATGGAAGAGAATGATGCCATGCTAAAAAATTGTGGGACACTAACATTGAAAAAAGAAGAGCTTCCCCTGAAATATGAAATTTTGAGTCATCCAAAATCTAGAGAAAATCTGACTTCTATTGAAGAGAGCAAAAGTCAAGGATTAGATGTTAAAGTTGAAAATGCTGGATCTCTTCTGCAGAAGGAAACATTTGGAGGATACAGTGAGCCAGGTTGCAATAGCAAAGCTAATTTATGTGGTGATAATGATATTGATTCTGGGGCCAGGGCTACCAAGTCATCTAGTGATACTGTACAGGATATGGTTATTGGCCCCCTACCGAGAGATTGCCTTGTTGAGGATTCTATTGGTGGTCAGAATTCTTGGAACAAAATCATGCAGTCGGGGATGGAGTCAAGGGATCATGTGAAACAAATGACATCAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAACGCCCCAGAATTATATGCGATTTTTTTGCTAAAGGATGGTGTATAAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGACAATACTGACCAGGAGGCTGAAGCAGACTTAGTTACTGCTCATCGGAGAAGAAAATTGAAACCGGAAGAAGGTGTCAGGGAAAATGTTGAGAGATCAAGGATGAATGAGCAAGAAGCAACTCCTAGTTGGCATCCATCTCAAGACAAACAGAAGTTTCCGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTCCATTTAGTGCATCAGACAATTGTTTCAGCCCAAATCTTTCTTTGAATTCAACCCATGCAGATGGAATGGCTACTCTTCGGAACCAACATATGTACAAAGGATATACTTCTCCACTTTTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCTTCAAGTATGTCACTCTCCCACCGGATTCTAGCCCAATCAGGACGTTCAATACCTTTTAGTTCATCTTTGGGGGCTAGTAATGTGGATTCTCAAAAGTTTTTGAGCACTGACAAAGAATATCTCACTTCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTCCTCTAGTTAGTTCGTCTAGGGTTCCATCATATCCTGCTGGATATAAATCAAAAATTTGTTCTTATGATTGGGAACCTTCTGTGCCGTTTCAGCCATCTTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCATGATAGCATTGAGATACCTAATATAGGATATGGGTCTTTGAAGGCTTCCCTTATAATTCATGGATCAAATGTACAGGCTTCATCACAGTTTCGGACATATGGTGATTCTGCTGTAGTTGGGAAACACATGTCCAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTGTAAAAATGAGCCAAATAAAAATTGTGCTCCTCATGAAAAAGATTGTCTTCCACCTGAAACAGAGATAACATCAGAAACTTATGTAAACTATCAAAGTAAAATAGGCATGGGACAACATACCTTTGGTGTTGCAGATAGTACAAAAAAAGAGAGGGATTTGGCTGAGTGTGATGCTAGACGTCATGGTGAAGGATCAGGGCACAAAAAGAAGCGAGTAGACAGGGATAAGAAAAATCATGAAATGGATGTCGACTCTCAGATGGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAATTTTTCCGTGCAGCTCTTGTTGATCATGTTAAAGAGTTGCTAAAACCAGCTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTAAAAAAATCAGTTGACAAGGTTGTTAGCACCTTAGAGTCCCATCAGATTCCGACCATAGATACTGCTAAGCAATATGTTTCTTCAAGTCAGGTGAAAATTGCAAAGCTGGTCAATAGGATGTTTCCATGTATGAGAAGAAGAGGAAATGGTTACCGAGTTGAGAAGAGTGAGGCAGAGGCACATCCACGCACCTTCACTAGGAAGGTGCAAGAGAACAATGGTGCTTTGGTTGCTGCTGGTCTTGAATAG 2763 0.4209 MSLPDSPVADDVETDPSLDEEEEEVEEEEIEEEEEEVEEEEEEEEIEEEEEEEEVEEEEVEEEEEEVEEEEVEVEVEEEEEEEEEEVEVEVEEEEEVEEIEVEVEEEEEEGEQGEEQELEEEEVEEEEEEEEEEEVEEEEEEEEVEEEEQQQQAVEEKKEEQQQTEEAVEKEEQQKQPQEEAMEEDKTAVPGSPLNADRDHEDSSQHMEFEGQDKNLGPVSSVAENPEVMPLSSMHCMEENDAMLKNCGTLTLKKEELPLKYEILSHPKSRENLTSIEESKSQGLDVKVENAGSLLQKETFGGYSEPGCNSKANLCGDNDIDSGARATKSSSDTVQDMVIGPLPRDCLVEDSIGGQNSWNKIMQSGMESRDHVKQMTSRTRSLSPSAEIKDGNKRPRIICDFFAKGWCIRGSSCSFLHIKDTVDNTDQEAEADLVTAHRRRKLKPEEGVRENVERSRMNEQEATPSWHPSQDKQKFPLRDNLFPENRFPFSASDNCFSPNLSLNSTHADGMATLRNQHMYKGYTSPLLSHSPNSSLVTQFPASSMSLSHRILAQSGRSIPFSSSLGASNVDSQKFLSTDKEYLTSKSTFSGSGREDFPLVSSSRVPSYPAGYKSKICSYDWEPSVPFQPSFFITSMNVSSPGDLYDPLHDSIEIPNIGYGSLKASLIIHGSNVQASSQFRTYGDSAVVGKHMSNDDKSSVSSHNKFCKNEPNKNCAPHEKDCLPPETEITSETYVNYQSKIGMGQHTFGVADSTKKERDLAECDARRHGEGSGHKKKRVDRDKKNHEMDVDSQMDGSMQKEPKALKFFRAALVDHVKELLKPAWHEGRLSKDAHIMIVKKSVDKVVSTLESHQIPTIDTAKQYVSSSQVKIAKLVNRMFPCMRRRGNGYRVEKSEAEAHPRTFTRKVQENNGALVAAGLE 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0546 920 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 399 418 IPR000571 GO:0046872
Aed9g0546 920 MobiDBLite consensus disorder prediction 12 151 - -
Aed9g0546 920 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 179 876 - -
Aed9g0546 920 SUPERFAMILY CCCH zinc finger 394 418 IPR036855 GO:0046872
Aed9g0546 920 SMART c3hfinal6 395 420 IPR000571 GO:0046872
Aed9g0546 920 Coils Coil 18 175 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 441 474 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 759 798 - -
Aed9g0546 920 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 179 876 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 196 210 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 1 224 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 152 187 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 441 458 - -
Aed9g0546 920 MobiDBLite consensus disorder prediction 782 796 - -
Aed9g0546 920 ProSiteProfiles Zinc finger C3H1-type profile. 394 421 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0546 Aed-Chr9 3811805 3823405 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed9g0546 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0546 - - gmx:100819734 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0546 9 3811805 3823405 Aed9g0546 9 3811805 3823405 ECH