Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0544 ATGGCGTCTTCATCTTCTGCCTCTCCTCGTGAGGGACACTACAGAGGAGTTAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGCGACCCCTGGAAGAAGACACGTGTCTGGCTAGGCACATTCGATACTCCCGAGGAGGCCGCCCTAGCCTACGACGGCGCCGCCCGCTCCCTCCGAGGCGCCAAGGCTAAGACCAACTTCCCTCCGCCTCCGCCGCCACTCTGTCTCGACCTCAACCTCCCTTGCTCCGATCCCCACCGCTGGCCCAACGTCCACCCCCGCAGCCTCGTCCTCACGGAGTTTCTCCAAACCGCCGTTCTCAAAGATATCGAGCCGCCACAACACCCTTTTCCACCCCCCGCCGGAGCTCTGCCCGTAGTTCAGGTCGTCGAGAGTTCTCCAACGGCGTCGTATCTCGGCCTCGTTAGGCGCGGGATCCCCATCGACTTGAACGAACCTCCCCCGTTGTGGCTATGA 483 0.6294 MASSSSASPREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPPPPPLCLDLNLPCSDPHRWPNVHPRSLVLTEFLQTAVLKDIEPPQHPFPPPAGALPVVQVVESSPTASYLGLVRRGIPIDLNEPPPLWL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0544 160 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Aed9g0544 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 7 143 - -
Aed9g0544 160 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Aed9g0544 160 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Aed9g0544 160 CDD AP2 13 69 IPR001471 GO:0003700|GO:0006355
Aed9g0544 160 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Aed9g0544 160 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Aed9g0544 160 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 143 - -
Aed9g0544 160 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Aed9g0544 160 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0544 Aed-Chr9 3801998 3802480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0544 1 160 AP2-EREBP Transcription Factor Family AT1G28360 49.239 1.16e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed9g0544 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0544 - - gmx:100798369 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0544 9 3801998 3802480 Aed9g0544 9 3801998 3802480 ECH