Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0509 ATGGGAAGCAGCAAGAAAACCTACCAAGAGGAAGAATCCGCGGTTCTATTTTCCCAACCTCAAACCCAGACGACAGAGTTGTTACCCTTCAACGAGAACGACCCACAGGACATGGTTATATACCAAGTCCTGAACGAAGCCAGTGCTTTCACTCTCACCAACACATTTCTCCCTCAGACTCAGAGGCTCCACGTCCAACCCCATTTGGGCCTTGAGCCCACCAGAAACATAACGAAGAAACACTACAGAGGAGTTCGGCGCCGCCCCTGGGGGAAATACGCGGCTGAGATTCGCGACTCGGCGCGCCACGGCGCCAGAATATGGCTCGGCACGTTCCAAACCGCTGAAGAGGCAGCCATGGCTTATGACCGAGCCGCCTTCAAGATGAGGGGCGCCAAGGCTCTGCTCAATTTCCCAGCCGAAATTGTTGCTGCTGCAGCTGCAGCAACACACTTATCTTTCAATAACAACGATGCTGCTTCTGATTCCAGTGCCGGTAGCTCTAATTCCACTCAGCTAAATAGGAATCACTCAGATAGCACAAGTAGCACAGCCACAGGTTAA 564 0.5248 MGSSKKTYQEEESAVLFSQPQTQTTELLPFNENDPQDMVIYQVLNEASAFTLTNTFLPQTQRLHVQPHLGLEPTRNITKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAAAAATHLSFNNNDAASDSSAGSSNSTQLNRNHSDSTSSTATG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0509 187 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 MobiDBLite consensus disorder prediction 159 187 - -
Aed9g0509 187 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677
Aed9g0509 187 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Aed9g0509 187 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Aed9g0509 187 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 9 159 - -
Aed9g0509 187 PANTHER DNA-BINDING DOMAIN 9 159 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0509 Aed-Chr9 3517387 3517950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0509 28 142 AP2-EREBP Transcription Factor Family AT5G47220 49.624 3.78e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed9g0509 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0509 K13433 - gmx:100811533 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0509 9 3517387 3517950 Aed9g0509 9 3517387 3517950 ECH