Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0469 ATGTCGTTAGAAGGGTCGTATGAGATTCATAACAATGAGGAAACTTCATCGGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATGAAGAATTAGGTTGCAGTACTGAAGATAACAACAGTGATACAGAAGAAGAGTGCTATGAGCTCACGACTAATGAGAATAATGATGCAAAGGATCATAATGAGGGCAATTCAGGAAATGGAAATGAGAGAAGATCGGGAACGTCGTCGGTGAGAGTGAGACAATATGTTAGATCCAAAATGCCTAGGCTTCGCTGGACTCCTGAGCTTCATCATTCATTTCTGCATGCTGTTCAAAGACTAGGTGGTCAAGAGAGAGCTACACCAAAGTTGGTGCTTCAACTAATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTACAGGTCGTCGAACCAAGAAGTACTAGGTCGTAGACCTCTGATACTCCATCATCAGTCTATTATAAGTTCTCAACAACATCTTAAGATGGGGAATGGTGGAATTATTCTAGCAAGTCATAATTTCAACAAACATAGTCATTTACCAAGTCTCCTGCAACCCTCCTTCTCCCTATCACGTTCACATACAAACTACACCGATTCAAGGCACCAGCATTGGTACATCAATCATCAAGCTTTTAGAGTACCAATAGCTTCAAGCCAAATTCAACCAAAGGATACACGCGGCAGAATTACACCCATGAGACCAGGCCAATTGCTTGAAGAGAAGAGGTGGCCTCCATTAGAGATTTTGAACAATCATCAATCGAAGTTCCAAAAGTTACCTGCCAATATTGTTGCTCCTAATAAACCAGTTGAATGGAGTTTAATGAACAACACAAGCATCAGAGATTATCTATCGAACAACTCCAATGAACCTCGCAACAATTCCAACAGTTTAAAGCTAGAACTTGATCCTCCATTTTGGATTAAGAAAGACGAGCAACAATTGCCTGATTTGCAACTAGGTTTGAGTCACACTATTGGAACCGATGGCAAGGTGGATCATTATAGAGAAACCCCAGAAATCAGCACCAAGCTTTCACTTTCTTAG 1122 0.4144 MSLEGSYEIHNNEETSSGCSQKCSSFDLNEELGCSTEDNNSDTEEECYELTTNENNDAKDHNEGNSGNGNERRSGTSSVRVRQYVRSKMPRLRWTPELHHSFLHAVQRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRSSNQEVLGRRPLILHHQSIISSQQHLKMGNGGIILASHNFNKHSHLPSLLQPSFSLSRSHTNYTDSRHQHWYINHQAFRVPIASSQIQPKDTRGRITPMRPGQLLEEKRWPPLEILNNHQSKFQKLPANIVAPNKPVEWSLMNNTSIRDYLSNNSNEPRNNSNSLKLELDPPFWIKKDEQQLPDLQLGLSHTIGTDGKVDHYRETPEISTKLSLS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0469 373 SUPERFAMILY Homeodomain-like 88 144 IPR009057 -
Aed9g0469 373 Gene3D - 89 146 - -
Aed9g0469 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 373 IPR044848 GO:0003700
Aed9g0469 373 MobiDBLite consensus disorder prediction 52 67 - -
Aed9g0469 373 MobiDBLite consensus disorder prediction 1 36 - -
Aed9g0469 373 MobiDBLite consensus disorder prediction 37 51 - -
Aed9g0469 373 Pfam Myb-like DNA-binding domain 92 142 IPR001005 -
Aed9g0469 373 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 373 - -
Aed9g0469 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 145 IPR006447 GO:0003677
Aed9g0469 373 MobiDBLite consensus disorder prediction 1 81 - -
Aed9g0469 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 146 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0469 Aed-Chr9 3267458 3269575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0469 81 147 G2-like Transcription Factor Family AT2G42660 80.597 1.99e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed9g0469 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0469 - - gmx:102669757 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0469 9 3267458 3269575 Aed9g0469 9 3267458 3269575 ECH
Aed5g1777 5 21405653 21408935 Aed9g0469 9 3267458 3269575 PCT