Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0460 ATGCACATATTCCTCACTACTTTATTCCTCACTCTGGAACATGCACATTTGATATTTGAAGTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCCCCTTCCGGGAATTGCAAATTGCTACTGGAAATTTCAATGCAAAAAATATCCTAGGACAAGGTGGTTTTGGTGTAGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTTCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTGCGTCTTTATGGATTTTGTATGACACCTGATGAAAGGTTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCCGATCGCCTGAGAGCAGAGAATTGCCGTGAAAAGCCATCGTTGGACTGGAACCGGAGGATGCGTGTTGCTCTTGGGGCTGCGCGGGGGCTCCTATACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACCACTGCAGTGCGGGGTACTGTGGGGCATATTGCCCCAGAATACCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACACAAGGCACTGGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATCCTTGATTGGTTTCATGAAATTCATGGTTTTTATCTTCATCCAGACTTTGCATTGGCCATAAATTTTGAACAAGTAGCTGAATTCCTGCAGGTTAGAACCTTATTTGAGGAGAAGCGGCTGGAAGCGTTAGTTGATAGGGATCTTAGGGGATGTTTTGATCCAGTAGAGTTAGAAAAAGCAGTGGAGTTGTCTTTACAATGTAGTCAGTCACTTCCCACTTTGCGGCCGAAGATGTCAGAAGTTTTAAAGATTCTAGAAGGTCTGGTAGGGCTATCGGTTAGGCCAGAAGAATCACAAGGAGGGACCAACTTATATGATGAAAGAACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTAA 1197 0.4269 MHIFLTTLFLTLEHAHLIFEVEQDCEFDIGHLKRFPFRELQIATGNFNAKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRAENCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWFHEIHGFYLHPDFALAINFEQVAEFLQVRTLFEEKRLEALVDRDLRGCFDPVELEKAVELSLQCSQSLPTLRPKMSEVLKILEGLVGLSVRPEESQGGTNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0460 398 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 270 - -
Aed9g0460 398 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 292 398 - -
Aed9g0460 398 Pfam Protein kinase domain 48 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g0460 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Aed9g0460 398 ProSiteProfiles Protein kinase domain profile. 47 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g0460 398 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Aed9g0460 398 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Aed9g0460 398 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 292 398 - -
Aed9g0460 398 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 270 - -
Aed9g0460 398 SUPERFAMILY Protein kinase-like (PK-like) 31 361 IPR011009 -
Aed9g0460 398 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Aed9g0460 398 SMART serkin_6 47 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0460 Aed-Chr9 3211186 3212712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0460 21 398 Receptor kinase-like Gene Family AT5G45780 71.693 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aed9g0460 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0460 - - gmx:100810610 671.003