Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0459 ATGGATCAAAACAGAAGCGAAGGAAGTGGTGAGGTGTTGGGTCCGCTTCACGAAGGGGAGGATGGGAATTTGAGTCATTTGATTGAAGAAGGGGTTGTAGTTGTAATTGATGCAGTAGATGGGAGCAGCTTGGGTGGAAGAGTTAGTATACGTGGAGAAGCTGGAACTTCAGGAGAGGTTGGCAAGGATTTGGGATCTGATAAGGAGGGGCTTGAGGAAGTTAAGGATCAGGACAAGCATGATCAAGAAAATATCAGTGATAATAAATTGGTTGGGGTTGATCAGGGAACTGGTTATAATTCAAACCATTTGGTTAATCATCAGGAAGTGATTGAAACTGTGGTTGTAATCGAGTCTGCTCAGACTGAGTACGTCAATGAAGATAATAGGAAATTGGAAGCAAAAGTTGATGAATCAGGGTTGAACTTGGTATCCATGAAAGCACCAGAAGGGGTGTCTGAAACTGACCAAAATTCATGTGTGATTGATATAAAGTGCAGGAGCTGCAAAAAGGTTTATGAGAATTCCGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGTGCAACCATCGGATGAAACAACTGTTGGCACTACTAGTAGTGCTACAACTGAAGATTTGATTCAGCTTGGTTGTGCATGTAAGAATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGGTGTTACTAATTATGGATTTATGGAAAAGTGGAATGAAAGAAGATTCGTTATCGAAGATGGTAACTCATCCCATAGGTTTGGTGGATGCTTGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTTATAGCATTTGTTCTACCATGGTTTTTTCGTGTAAATATGTTCTAG 933 0.4159 MDQNRSEGSGEVLGPLHEGEDGNLSHLIEEGVVVVIDAVDGSSLGGRVSIRGEAGTSGEVGKDLGSDKEGLEEVKDQDKHDQENISDNKLVGVDQGTGYNSNHLVNHQEVIETVVVIESAQTEYVNEDNRKLEAKVDESGLNLVSMKAPEGVSETDQNSCVIDIKCRSCKKVYENSEGERICRICHLTSVQPSDETTVGTTSSATTEDLIQLGCACKNELGIAHVHCAEAWFKLKGNRLCEICGETAKNVSGVTNYGFMEKWNERRFVIEDGNSSHRFGGCLRGQPFCNFLMACLVIAFVLPWFFRVNMF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0459 310 MobiDBLite consensus disorder prediction 46 83 - -
Aed9g0459 310 MobiDBLite consensus disorder prediction 62 83 - -
Aed9g0459 310 Pfam RING-variant domain 182 243 IPR011016 GO:0008270
Aed9g0459 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 310 - -
Aed9g0459 310 CDD RING_CH-C4HC3_MARCH 182 244 - -
Aed9g0459 310 ProSiteProfiles Zinc finger RING-CH-type profile. 174 250 IPR011016 GO:0008270
Aed9g0459 310 PANTHER ZINC FINGER, RING-CH-TYPE 1 310 - -
Aed9g0459 310 MobiDBLite consensus disorder prediction 1 21 - -
Aed9g0459 310 SUPERFAMILY RING/U-box 176 246 - -
Aed9g0459 310 SMART ringv_2 181 244 IPR011016 GO:0008270
Aed9g0459 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0459 Aed-Chr9 3204510 3208262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0459 162 309 C3H Transcription Factor Family AT5G05830 39.744 1.43e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0459 - - gmx:100791720 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1784 5 21445405 21448095 Aed9g0459 9 3204510 3208262 PCT