Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0447 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATTCATTTGACAAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTGGTTGTGCTGCAGAGATCGCGGTCTCTTAGAGACCCTTCTGCAAGTCCTCCCTCATGGCACTCGCCTTCTGTAGTTGATTTGCTTTTCAAAAGAGTTGAAAATGATGCCGTGTCTCAAGGGGGAAGAAGGTCTGTAGGTGTCGAGCCAAGGAAGGAAGGGAGAAGATTGTCTGGAACTTCACCACCCTTGGTGAGTATAGGTTCATCAAGAGTTGCTCCGGGTGAGATTGGTAGGGGTAATGATGGTATAACCGCACCTAGTGAACGCAGTAGCCGGAGTGGAATGGGAGATGGAAAGAGAATTGGGAGGGAAGAATCTGGTAGGAAGAATGATAGGCCTGACTTTTTGGATGTTAATCAAGAGGAGCCTCTCAATCAAGCTGGCAAAAGCTTGGCTGAAGATGTTATTTCAAGGCACTCAGAGTCTAAAGCTAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATGCTCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACGTTCATTTTCGTGGAAGATTTCCTAGACAGGAGAAAATTATTGAGGAGGTAGAAGCCCGGATGCGCAGTCATGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTCCGAAGCGCACGAAGAACTCGGGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAAATGTCTGTGGCTTCCAACTCATTAGCTCAGGCTTCAGCTCACCATAAATATTACTTGGAGGAGGCTGATGAATTTGCAGATGGAAATGTTACCAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCAAGGTTGAAGAAAGGGACATTTACTGCCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCGCTCAAGCTCATGTACGAAGTCTGATGTAGAGGCACTGCCTTTACTAGTTGAGGCATCTGGATCTCATGCAAGCACTGAAAATGCTTGTTGGGATCGTGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTGTTCAAGCATGATGTTGATTCTGACCTCGCTTCAGAAGCCAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGCCACAGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCGAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCCAACGCAGTTGTGAAAAGGAAAGTTGGGTTGTTGTATGTGTTTTATGGCCCCCATGGCACTGGAAAAACTTCCTCTGCTCGCATATTTGCCAGAGCTCTGAATTGTAATTCTTCAGAGCACCCAAAACCTTGTGGTTTTTGCAATTATTGCGTAGCACATGATATGGGTAAGAGTAGAAATATTAGGGAAGTAGGTCCAGTTAGTAATTTTGACTTTGAGAGCATCATGGACCTACTCGACAATATGATTGTTTCCCAGCTTCCGTCACATTACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAACAGATTGTTGGAATGCTATATCGAAGGTCATTGATCGAGCACCTAGACGTCTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCGTGAAACTCATTGCATCAAGGTCAGACGGATCTTTGAGAGATGCTGAGATGACCCTGGAACAACTTAGTTTGCTTGGGCAGAGAATATCCGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCCGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTCGAGCCATTGGCTTTAATGTCACAACTCGCCACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCGCAAGAGAAAGGCGAAGAAGGAAGTTTTTCCGGAGACAACCTTTGTCCAAAGAAGACATGGAGAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCCTTACTTCAGCTTGCTCCAGACCAGCAATATGTGTTGCCAACTTCATCTGATAATAGTTTCAATCACAGTCCCTTTGCTCTAAAAGATGCAGATGCCAGAGAAGCAGCTAGACTGACTGGTAATCCTGTTGACATTCCTAACAAAGTGAGACGTTTATCAATGGATGCTAGAATTGAAAATTCCCATGCTGGAAGCTCAGCAGATGGTATGACAAGGGGTCTTGGTTCTGAGAAAAAACGACACAGCGTGTCTGGTTTTACTCCTCAACATGCTCATTCACAAGCCACTGATAAGATTAGGATGAGCGAGAGGCAGATTTTGGGGAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTGCTTCAGAGGATACAAGTTACTGGTCTGAAAGAGTTCCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAATTGACCAAATCTACTGCCGAGAAGTTCAGAGGTCACATCTTACAAGCATTTGAATCTGTTCTTGGAGCTTCTATAACAATAGAAATTAGATGTGAGTTAAATAAAGATGCAGCCTCGGCTGTTCAACAACCTCTTACATTGCCCGCCACCAATGATAGTTCATCTCAGATTAGAGACTTTAATGGTGTTGGCGCTCTAGCACATCCATCATTAACTGATTCTGTTGAAAAGAGAAGGGGTGAAATCATAGAAGAAGCATCTTCTCAAGTGGAGCACAAAAATAGGGAGCAGCAGGTTGATGCTCACGGAACATCTTATAAAAATTTAGAAGGTACAAGTATAGGACAATCATCAGCTTCCCAAAAAGAGCCAATTGTTAAGTCGCATTTGGACCAAAGAAAGCTTATGGAGCAGGGTCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCACTTGCTCATGTAATCCAACAGGCAGAAGGTCAGAGAAGTGGGTGGTCTAAACGTAAAGCGGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATCTGTATGAGACTGGAGCCAAGATCAAGGAGCTTGTTATGCTGGAAAGCATCAAGAGTAACCCGGCGAAAGCTTTCACGCTTGAGAATTCGAAGCCGAAAACCACGTGCACTGCTGAATCTTGTTTCATGTGGGAAATGTCTCTCTACAAAATCTCCAAGGTAGTAGTTTTGGGAATGTCATTCAAAAGCCATTTGTATTGCCTTTTTCTTTTTCATTTAATTAAATAA 3645 0.4291 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRRSVGVEPRKEGRRLSGTSPPLVSIGSSRVAPGEIGRGNDGITAPSERSSRSGMGDGKRIGREESGRKNDRPDFLDVNQEEPLNQAGKSLAEDVISRHSESKARKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASSNVHFRGRFPRQEKIIEEVEARMRSHGSGMNRGKRRKFRSARRTRVATTSRDIGAENEMSVASNSLAQASAHHKYYLEEADEFADGNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLKKGTFTANGRNISEMPVASERSSSCTKSDVEALPLLVEASGSHASTENACWDRDYSGELGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVVKRKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRLVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDAVKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFARERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALKDADAREAARLTGNPVDIPNKVRRLSMDARIENSHAGSSADGMTRGLGSEKKRHSVSGFTPQHAHSQATDKIRMSERQILGKNRKEIEEIWLEVLQRIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGASITIEIRCELNKDAASAVQQPLTLPATNDSSSQIRDFNGVGALAHPSLTDSVEKRRGEIIEEASSQVEHKNREQQVDAHGTSYKNLEGTSIGQSSASQKEPIVKSHLDQRKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLYETGAKIKELVMLESIKSNPAKAFTLENSKPKTTCTAESCFMWEMSLYKISKVVVLGMSFKSHLYCLFLFHLIK 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0447 1214 MobiDBLite consensus disorder prediction 860 898 - -
Aed9g0447 1214 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Aed9g0447 1214 MobiDBLite consensus disorder prediction 146 171 - -
Aed9g0447 1214 Pfam DNA polymerase III, delta subunit 473 630 - -
Aed9g0447 1214 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Aed9g0447 1214 PANTHER PROTEIN STICHEL-LIKE 3 180 1141 - -
Aed9g0447 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Aed9g0447 1214 MobiDBLite consensus disorder prediction 438 457 - -
Aed9g0447 1214 MobiDBLite consensus disorder prediction 259 275 - -
Aed9g0447 1214 CDD AAA 471 630 - -
Aed9g0447 1214 MobiDBLite consensus disorder prediction 255 281 - -
Aed9g0447 1214 Gene3D - 448 627 IPR027417 -
Aed9g0447 1214 Coils Coil 766 793 - -
Aed9g0447 1214 Gene3D - 631 693 - -
Aed9g0447 1214 MobiDBLite consensus disorder prediction 91 211 - -
Aed9g0447 1214 SMART AAA_5 489 630 IPR003593 -
Aed9g0447 1214 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1141 - -
Aed9g0447 1214 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Aed9g0447 1214 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0447 Aed-Chr9 3119031 3126236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0447 456 742 Core DNA Replication Machinery Family AT1G21690 23.875 3.65e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0447 - - gmx:100809005 2100.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0447 9 3119031 3126236 Aed9g0447 9 3119031 3126236 ECH