Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0440 ATGGCTTCAGGGGCAATTTTCTCGTCTCTCCGGCGGAGAAGGTCGCCGACGTTGGAAGCATTTCTGGCCCCCGTTGACTTAAGCGAGGTCGCTTTGGTTCAGACCCTTGTTTCCGTCGCCAACGAGATTGTATCGTGTTTTTCGAAGCATCGTTTCTTCTTCCAGCGCAAGAACTCGCGGTCTCTGATACGAAAAGTCGAGGTTTTTCAGTTGCTTTTGGAGTATTTGCGTGATTCCGATTCGTGTTCTTCGTGTCTTCCACCCACTGCGGTGCTTTGTCTCAAGGAGCTCTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCGAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCATGATCTGAACCAGGAAATTTCAACCCTTTTGGATGTTTTTCCTGTTAAGGATGTTTTGTTGAGTAAGGATGTTAGGGAACAAGTTGAGCTCTTGCAGAAGCAGTCCAGAAGGGCTAAGCTTTTTATAGATATGAAGGATGATGCTCTCAGGGTTCGATTTTTTTCTTTTCTTGACGAGTTTGAGAATGGAAGGATTCCTGATTCTGCTGAATTGAGATCTTTCTATTTTGAGAAGTTGCAGATTGTTGATGCGGCTAGTTGTAGGACTGAAATTGAGGGTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTATTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTCTTTGGCTTTGAGGAGGATGAGCTTGGTGTTGAGAGTGGAAGTCAGAAGAAGCCTAAGAGGAGGTTGATTACCAAGGAAATTGCTGAAACATTTTTGACTGTTCCTAAGGACTTTTGCTGTCCGATTTCGTTGGATTTGATGAGAGACCCCGTGATCATTTCAACTGGTCAAACCTATGATAGAAGCTCAATTTCGAGATGGATGGAAGAAGGGCATACTACTTGCCCCAAAACAGGCCAAATGCTTGCTCACACTCGCCTTGTTCCAAACCGGGCTCTGAGGAATTTGATTGTGCAGTGGTGCACTGCACATGGAGTTCCACTTGAGCCACCGGAGGTCATGGATGCTATGGGTGAAGCTTTCCCATTGGCTTGTCCCACCAAAGCTGCCCTTGAAGCCAACAGAGCCACGGCAACACTTCTCATTCAGCAGCTCGCTGGTGGGTCTCAAGCCGGGAAGACTGTGGCTGCTCGGGAGATTCGGTTGCTCGCTAAAACTGGAAAGGAAAACCGTTCCTTCATTGCAGAAGCTGGGGCGATTCCGTATCTGAGGAATTTACTTTCATCTCCTAATGCTGTTGCCCAGGAGAATTCTGTGACTGCGCTGCTCAATTTGTCCATTTTTGACAAGAACAAAAGTAGGATTATGGACGATGAAGGGTGTCTAGGATCAATTGTCGATGTGTTGAGATTTGGACACACCACAGAGGCAAGGGAAAATGCTGCTGCGACGTTGTTCAGCCTATCAGCTGTCCATGACTACAAGAAAATAATTGCAGATGAGATGGGAGCAGTCGACGCCCTAGCAGGGCTATTGCAAGAGGGGACTCCAAGAGGGAAGAAGGATGCTGTGACAGCCTTGTTCAATCTTTCCACACACAATGAGAATTGTGTTAGAATGATTGAGGCAGGGGCAGTGACAGCTCTTGTTGGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCAGCTGGGGCGCTGGCCTTGATTGTTCGGCAGCCAATTGGGGCCAAAGCAGTGGTGAATGAGGAAGCAGCAGTGGCTGGATTAATTGGAATGATGCGTTGTGGAACGCCTAGAGGTAAAGAGAATGCGGTTGCAGCATTGCTTGAGTTGTGCCGGAGTGGAGGTGCAGCTGCAACAGAAAGAGTTGTGAAGGCGCCAGCTTTGGCTGGATTACTTCAAACACTCCTTTTTACAGGAACAAAACGGGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAAAGATGTGAGAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCGTTTGCTAGCAATTCAACTACAACTAGGGATACCAGCTTTGCCGTCTTCAGTCAAGAAAATGGGTGTGTTCAGATTGAGTTGCGTATAGCTGGATATTATGTGAGGATGCCTCGTACGTGA 2190 0.4717 MASGAIFSSLRRRRSPTLEAFLAPVDLSEVALVQTLVSVANEIVSCFSKHRFFFQRKNSRSLIRKVEVFQLLLEYLRDSDSCSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVLLSKDVREQVELLQKQSRRAKLFIDMKDDALRVRFFSFLDEFENGRIPDSAELRSFYFEKLQIVDAASCRTEIEGLEEQIVNHEGDIEPIISVLNGLVAMTRYCRFLLFGFEEDELGVESGSQKKPKRRLITKEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVQWCTAHGVPLEPPEVMDAMGEAFPLACPTKAALEANRATATLLIQQLAGGSQAGKTVAAREIRLLAKTGKENRSFIAEAGAIPYLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDDEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEMGAVDALAGLLQEGTPRGKKDAVTALFNLSTHNENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSTTTRDTSFAVFSQENGCVQIELRIAGYYVRMPRT 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0440 729 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Aed9g0440 729 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Aed9g0440 729 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Aed9g0440 729 SUPERFAMILY RING/U-box 280 364 - -
Aed9g0440 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Aed9g0440 729 PANTHER U BOX DOMAIN-CONTAINING 12 700 - -
Aed9g0440 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Aed9g0440 729 Coils Coil 215 235 - -
Aed9g0440 729 SUPERFAMILY ARM repeat 397 672 IPR016024 -
Aed9g0440 729 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 700 - -
Aed9g0440 729 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Aed9g0440 729 CDD RING-Ubox_PUB 295 337 IPR045210 -
Aed9g0440 729 SMART arm_5 424 464 IPR000225 GO:0005515
Aed9g0440 729 SMART arm_5 550 588 IPR000225 GO:0005515
Aed9g0440 729 SMART arm_5 509 549 IPR000225 GO:0005515
Aed9g0440 729 SMART arm_5 589 630 IPR000225 GO:0005515
Aed9g0440 729 Gene3D - 394 670 IPR011989 -
Aed9g0440 729 Gene3D - 26 147 IPR036537 GO:0007166
Aed9g0440 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0440 Aed-Chr9 3087342 3090079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0440 1 703 U-box Gene Family AT1G29340 70.334 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0440 - - gmx:100811153 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0440 9 3087342 3090079 Aed9g0440 9 3087342 3090079 ECH
Aed5g1810 5 21592293 21594461 Aed9g0440 9 3087342 3090079 PCT