Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0400 ATGGCACAGAAAGAAGAGGAAGACAGCAAAAAGGTAAAAGTTCCATTTTACAAGCTTTTCACCTTTGCAGACCGGCTTGACGTGACTTTGATGATCATTGGTGTCATCTGTGCCATGGCTAATGGGTTTGCTCAGCCTCTCATGACCCTCATTTTTGGGAAGCTTATTCACGTCTTTGGCTCCACCGATCCCTCTCAAATTGTCAGGGAAGTTGCTAAGCAATATTCTGATGTGAGGGTTGTTTATTTGGGTGTTGCAGAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCAGCAAGGATCCGTGGCTTGTACTTGAAAACTATACTGAAGCAAGACATTGGTTTCTTTGACACTGAAACAACAACTGGTGAGATTATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGATTATACAACTTGTTACATCCTTTCTTGGTGGCTTTGCGATTGCCTTTACAAAAGGCTGGGAACTCTGTCTAGTTTTGCTTGGATGCATTCCTTGTATTGTTATTGTTGGTGGAATCATGTCCATGATGATGGCGAAAATGTCAGCTCGTGGGCAAGCTGCTTATGCAGAAGCTGGAAATGTTGTAGAACAAACAGTTGGAGCCATTAGAACAGTGGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAAAAATATAATAACAAGTTAAGAGTTGCTTACACTACAACTGTTCAACAAGGGTTGGCCTCAGGGTTTGGAATGGGAGTACTTTTAATGATTACTTTTTGCACCTATGCACTTGCCATGTGGTATGGTTCCAAATTGATCATTGAGAAAGGCTATGATGGTGGAAATGTTTTCAACATTATCATATCAATCAATACAGGTGCAATGTCACTTGGTCAGTCAACCCCCTGTATAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAACCGAAAATTGATGCTTATGACACCAATGGTGTTGTCTTGGAAGACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTTCAGATATTTTCCGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTTGGTCAAAGTGGAAGTGGGAAGTCCACTATAATCAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGGGAAATACTTATAGATGGTGTCAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTATCCTGTTTACAGCTAGTATTAAAGAGAACATAGCATACGGGAAAGAAGGTGCAACTGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGGGAATTGACACGATGGTAGGAGGGCATGGAACTCAACTTTCTGGTGGCCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCCAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTGGATGCTGAGTCTGAACGTGTTGTCCAAGAAGCATTAGAAAAAGTTATGTCACAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGACATGCTGACATCATAGCAGTGGTTCATCAGGGCAAAATTGTAGAAAAAGGAACTCATGATGAGTTAATCAAGGATTGTGATGGTGCTTATTCTCAGCTTATTCGTTTACAAGAAGGAAATGAAGGAGTAGAAGGGAGCTGTAAGTTAGAATCAGTCAAGTCAAATAACAACAGCTTCAACATAGATAGTCACATGGCTAGATCTTTAACTCAGAGAACATCCTTTGCAAGATCAATAAGTCAAGGCTCATCAAGCAGTAGACACTCTCTCTCACTTGGCTTAGCTCTTCCTTATCAAATTCCTTTTCATGAGTCTGGAGAAGGAGACAATGAGGATGTTGAAAGTAGTGAAGTTGATAATAATAAGAAGCAAATAGTTCCTATTAGCCGTTTGGTTAAGTTGAACAAGCCAGAGGTTCCTGTCTTACTACTAGGATCCATTGCTGCAGCAGTACATGGTGTTACTCTCCCTATATTTGGCCTCTTGCTTTCATCAGCTGTTAACTCGTTTTATAAGCCTCTGGATCAACTTAAGAAAGATTCTCAGTTTTGGTCACTTCTATTTGTTGGTTTGGGGGTTCTCAGTTTTGTGGCTTTACCCGTGCAAAACTACTTATTTGGGATAGCTGGTGGAAAACTTATAGAACGTATTCGTTCATTGACATTTAACAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATCGACCTTCAAATTCAAGGTATGTTGTGGTACTGATATTCACTTATTTACTTCCAATAGTGAAAGAGAAAATAAATACACATTCAAAGTCACATGTTAATTCATCTAACTCAAAAGAAATGGAATTGCCATGCAGTGGTGCAGTTAGTGCAAGGTTAGCTACTGATGCTTCAACAGTGAGAAGTCTTGTGGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACGATCTCAGCAGGTTTAATTATATCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTGCTTATACAAGGATACCTTCAGACCAAGTTTGTAAAAGGATTCAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGATGGACATGTACAGGAGGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGGTTGGGTCTTGTTAGTGGTGCAGGATTAGGTTTCTCCTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGAGCTATTCTTGTGCAACACGGAAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTTGAAATTCTTGACAGCAAACCAGCGATTGACTCCAGCAGTGAAGAGGAAACAACACTAGACACCATCAGAGGTGAAATTGAACTTCAACAAGTCAGCTTTTGTTACCCAACAAGGCCTAACATTCAAATTTTCAAAGACATGTGTCTAAGCATGCCAGCTGGAAAGACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACCGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATACTGGACGTGTACTAATTGATGGAGTGGATATAAAAATGTTAAAACTAAACTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCAATTCTATTCAATGATACCATTCGTGCCAACATAGACTATAGTTATAGAAAAGAGGGAGTTGCCACAGAGGAAGAGATAATTGCAGCAGCAGAAGCAGCCAATGCACACAAGTTCATAAGTTCTCTTCCAAATGGTTATGACACCAATGTTGGAGAAAGAGGCACACAACTGTCAGGGGGACAAAAACAGCGCATAGCCATTGCGAGAGCCATTCTTAAAGACCCAAGAATACTTTTGCTTGATGAGGCAACCAGTGCTCTTGATGCAGAATCAGAGCGTGTGGTTCAAGAGGCTCTTGATAGAGTGAGTGTGAATAGAACTACTGTTGTGGTGGCTCACCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCAGTGGTGAAAAATGGGGTGATTGCTGAGAAGGGAGGACATGATGCTTTGATGAAGATTGATGCTGGAGTTTATGCTTCTTTGGTAGCGCTCCATATTAGTGCATCATAG 3894 0.4104 MAQKEEEDSKKVKVPFYKLFTFADRLDVTLMIIGVICAMANGFAQPLMTLIFGKLIHVFGSTDPSQIVREVAKQYSDVRVVYLGVAEVSCWMVTGERQAARIRGLYLKTILKQDIGFFDTETTTGEIIGRMSGDTILIQDAMGEKVGKIIQLVTSFLGGFAIAFTKGWELCLVLLGCIPCIVIVGGIMSMMMAKMSARGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIEKYNNKLRVAYTTTVQQGLASGFGMGVLLMITFCTYALAMWYGSKLIIEKGYDGGNVFNIIISINTGAMSLGQSTPCINAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEDIKGDIELKDVYFRYPARPDVQIFSGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPEAGEILIDGVNLKNFQVRWIREQIGLVGQEPILFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEKVMSQRTTVVVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDCDGAYSQLIRLQEGNEGVEGSCKLESVKSNNNSFNIDSHMARSLTQRTSFARSISQGSSSSRHSLSLGLALPYQIPFHESGEGDNEDVESSEVDNNKKQIVPISRLVKLNKPEVPVLLLGSIAAAVHGVTLPIFGLLLSSAVNSFYKPLDQLKKDSQFWSLLFVGLGVLSFVALPVQNYLFGIAGGKLIERIRSLTFNKVVHQEISWFDRPSNSRYVVVLIFTYLLPIVKEKINTHSKSHVNSSNSKEMELPCSGAVSARLATDASTVRSLVGDTLALIVQNIATISAGLIISFTANWILAFVILAVSPLLLIQGYLQTKFVKGFSADAKVKYEEASQVATDAVGSIRTVASFCAEPKVMDMYRRKCSGPEKQGVRLGLVSGAGLGFSFLALYCTNAFCFYIGAILVQHGKATFGEVFKVFFALTVTAVGVSQSSALAPDTNKAKDSAASIFEILDSKPAIDSSSEEETTLDTIRGEIELQQVSFCYPTRPNIQIFKDMCLSMPAGKTVALVGESGSGKSTVISLLERFYNPDTGRVLIDGVDIKMLKLNWLRQQMGLVGQEPILFNDTIRANIDYSYRKEGVATEEEIIAAAEAANAHKFISSLPNGYDTNVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVSVNRTTVVVAHRLATIKGADIIAVVKNGVIAEKGGHDALMKIDAGVYASLVALHISAS 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0400 1297 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 1017 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g0400 1297 CDD ABC_6TM_Pgp_ABCB1_D1_like 31 309 - -
Aed9g0400 1297 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1052 1291 IPR003439 GO:0005524
Aed9g0400 1297 CDD ABC_MTABC3_MDL1_MDL2 1052 1290 - -
Aed9g0400 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1043 1291 IPR027417 -
Aed9g0400 1297 SUPERFAMILY ABC transporter transmembrane region 18 332 IPR036640 GO:0005524|GO:0016021
Aed9g0400 1297 Pfam ABC transporter transmembrane region 31 299 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g0400 1297 Pfam ABC transporter transmembrane region 828 1002 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g0400 1297 Pfam ABC transporter transmembrane region 692 788 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g0400 1297 SUPERFAMILY ABC transporter transmembrane region 679 1025 IPR036640 GO:0005524|GO:0016021
Aed9g0400 1297 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 827 1294 - -
Aed9g0400 1297 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 827 1294 IPR039421 -
Aed9g0400 1297 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 9 792 IPR039421 -
Aed9g0400 1297 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 348 584 IPR003439 GO:0005524
Aed9g0400 1297 Gene3D ABC transporter type 1, transmembrane domain 659 1040 IPR036640 GO:0005524|GO:0016021
Aed9g0400 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 586 IPR027417 -
Aed9g0400 1297 SMART AAA_5 375 561 IPR003593 -
Aed9g0400 1297 SMART AAA_5 1079 1274 IPR003593 -
Aed9g0400 1297 CDD ABC_6TM_Pgp_ABCB1_D2_like 682 1035 - -
Aed9g0400 1297 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 32 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g0400 1297 Pfam ABC transporter 1071 1222 IPR003439 GO:0005524
Aed9g0400 1297 ProSitePatterns ABC transporters family signature. 487 501 IPR017871 GO:0005524
Aed9g0400 1297 Gene3D - 1043 1296 IPR027417 -
Aed9g0400 1297 Gene3D - 339 593 IPR027417 -
Aed9g0400 1297 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 9 792 - -
Aed9g0400 1297 Gene3D ABC transporter type 1, transmembrane domain 4 327 IPR036640 GO:0005524|GO:0016021
Aed9g0400 1297 Pfam ABC transporter 368 515 IPR003439 GO:0005524
Aed9g0400 1297 ProSitePatterns ABC transporters family signature. 1194 1208 IPR017871 GO:0005524
Aed9g0400 1297 CDD ABC_MTABC3_MDL1_MDL2 348 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0400 Aed-Chr9 2800195 2805422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0400 693 1296 Calmodulin-binding Proteins AT2G36910 39.967 6.61e-128 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0400 K05658 - gmx:100792531 2121.28