Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0392 ATGAGGCTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCTGAGACTGATGAAGTGTACGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTGCCAGCGGAGTTGGGCTCTCCAAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGTGGATTCTCTGTGCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGTGAGAATGATAAGAACCAACTTCTTCTTGGAATCCGCCGTGCTAATCGCCCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCTTCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCCGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTTGAAACGGAGGAGTCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGTCAAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACGTTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGGCATGAAGGATGACGATTTTGGCCTGAATTCACCTCTGTTGTGGCTCCGAGACACTGATAGAGGGCTTCAGTCTCTTAATTTCCAGGGGATTGGGGTTAATCCTTGGATGCAGCCAAGATTTGATCCCACCATGTTGAATATGCAAGCAGATATGTATCATGCTGCGGCTGCTGCTGTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCATTCTGCTTCCTTACTTCAATTTCAGCAACCACAAAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCTCAGATGTTGCAGCAGTCACAACCTCAGCAGATTTTTGGAAATACTAATCAAGAGAATCAGCATTCACCACAATCTCAGCCACAAACACAGGCTCATCTTCAGCAACAGCTACAACATCAACACTCATTCAATAGTCAACATCATCACCAGCAGCAGCAACAACTGCAACAACAGACACAGCAGCAACAGCAAGTAGATAATCAGCAGATTTCCAGTGCAGTCTCTACAATATCTCAGTTTGTTTCAGCTCCACAACCTCAATCACCACCTATGCAAGCTACCTCTTCCCTGTGTCAACAGCAAAAATTTCCTGATTCAAATGGGAACTCTGTGACTACTATTGTTTCACCCCTGCACAGTATATTGGGTTCTTTTCCCCAGGATGAAACATCTCAACTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAAGCGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCCTCTCTGAGTACCGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCACTGATCCACAAAACCATCTCTTATTTGGTGTCAATATAGAGCACTCGTCACTGCTCATGCCTAACGGGATGTCAAGCCTTAAGGGGGTCAGCGGCAACAATGACTCCTCAACCCTGCCATATCAATCTTCTAATTATCTGAATACTACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACCCAACATAGGCGACTCGGGTTTCCTGCAGAGTCCGGAAAATTCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTCATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCACCAGCTACCATGAGCTGCGTGGTGAACTCGCCCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGGAAATGGGCAACAATGGCCTTGAGTTGTTGAACTCAGTTCCAATTCAAAGGCTTTCTAATGGCATCTGTGATGACTATGTTAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAGCTGTGGGGTCTTTAGACTACTAA 2589 0.4639 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGENDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPTMLNMQADMYHAAAAAVQDMRSLDPSKQHSASLLQFQQPQNFPNRTAALMQAQMLQQSQPQQIFGNTNQENQHSPQSQPQTQAHLQQQLQHQHSFNSQHHHQQQQQLQQQTQQQQQVDNQQISSAVSTISQFVSAPQPQSPPMQATSSLCQQQKFPDSNGNSVTTIVSPLHSILGSFPQDETSQLLNLPRTSSWIPVQNSSGWPSKRVAVDPLLSSGASLSTVSQNAITLPPFPGRECSIDQEGSTDPQNHLLFGVNIEHSSLLMPNGMSSLKGVSGNNDSSTLPYQSSNYLNTTTGTDSSLNHGMTPNIGDSGFLQSPENSGQGNPLNKTFVKVHKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGNNGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0392 862 Pfam AUX/IAA family 723 814 IPR033389 -
Aed9g0392 862 Gene3D - 125 202 IPR015300 -
Aed9g0392 862 PANTHER AUXIN RESPONSE FACTOR 1 186 - -
Aed9g0392 862 PANTHER AUXIN RESPONSE FACTOR 187 842 - -
Aed9g0392 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 187 842 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed9g0392 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 186 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed9g0392 862 Pfam B3 DNA binding domain 127 190 IPR003340 GO:0003677
Aed9g0392 862 Gene3D - 726 818 - -
Aed9g0392 862 MobiDBLite consensus disorder prediction 695 727 - -
Aed9g0392 862 SUPERFAMILY DNA-binding pseudobarrel domain 112 227 IPR015300 -
Aed9g0392 862 Pfam Auxin response factor 224 307 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed9g0392 862 Gene3D - 262 334 - -
Aed9g0392 862 ProSiteProfiles PB1 domain profile. 729 813 IPR000270 GO:0005515
Aed9g0392 862 CDD B3_DNA 126 195 IPR003340 GO:0003677
Aed9g0392 862 SUPERFAMILY CAD & PB1 domains 728 804 - -
Aed9g0392 862 Coils Coil 499 519 - -
Aed9g0392 862 MobiDBLite consensus disorder prediction 464 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0392 Aed-Chr9 2743241 2749502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0392 1 453 B3 DNA Binding Superfamily AT1G30330 80.738 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed9g0392 Auxin_resp 2.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0392 - - gmx:100798719 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0392 9 2743241 2749502 Aed9g0392 9 2743241 2749502 ECH