LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g0356	ATGTCGCTTTCTTGTGCTAGAAACTTCTTCCAGAGGTTCTGGCAAGATGAATTCCAAACGGGAAATATTCCCCATGGAAGCTTTTTGGTCAATGATGATCTCCTTCCATCTCTTGGAGCTAGAATGAACCAGGAAACTAGACTTAGAAGATACATAATCTCCCCTTTCAATCCTCACTATAGGGCTTGGGAGTTGATACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTTCCTTGCAAGGAAGATGCTTTATTCATCGTTGACAACATTGTCAATGCCTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGATCACCATTCTTATCTTCTTGTTGATCATCCAAAGAGAATTGCAATCAGATACCTATCTACCTGGTTTGCTTTTGATGTCTGCTCAACAATACCATTTCAATCCTTCAGCTTCCTCTTCAGTCATAGCAGTGAGCTAGGCTTCAAAGTTTTCAACATGTTTCGGTTATGGCGGTTGAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTTTGGACTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCAGTGCACTGTGCGGGGTGTTTTAACTACCTCATTGCAGAGAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCAGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTGACTCTTACTACCACTGGCTATGGGGATTTGCATGCTGAGAACACGAGAGAGATGCTCTTTGATATAGCTTACATGCTGTTCAACCTTGGTTTAACATCATATATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGCCGTACCAGAAATTTTAGGGACTCAGTGAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCCCACCGCTTACAGGATCAAATGTTGTCACACATATGTTTGAGGTTCAAAACAGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTATCGTGCAAAAGCTCTACCTTTTCCAAGGAGTCTCGCATGATTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTGATACTGCAAAACGAGTCTTCCACAGAACTTCATGTGCTGGTTTCAGGGGCAGTGGTTCATGGGAAGGCAGTTGCAGTAGATGCATTTGGAGAGATTGGAGTTTTATATCATATACCACAGCCTTTTACAGTTCGGACCACAGAACTTTCTCAGATTTTAAGACTCAGCAAAGCATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGATTAAAGGGGCGTGAAGGTTTCGGCTTTGAATATCCATGCACAGATTCTGGACGGTTTCCACATGAAGTGCTTCAAGGAGGTAACACGAGAGGAAGCCCTTCTCACGAGTGTACAAATAATTCACAAGAGCATTCATTAATGCATGAAGGAGAGTGCATAGATATTACAAACTCGGAGACCAGTTTGCGTAAGGTGACTAATAACGGTCATTTAGTCACTAAACATAACATGATCCCTGAGCATTATAGAAGAGATCCTCATGCCCCTGCACACAAAGGGAATCTAGACATTGTTGAAATTCTGCTTGAAAGAGACGCATATCCTAAACCAAATTCCATAGGGTGGGCACAAAATGCTCTGCTAAAACAGCCAAAAAACAAGAGCATTTGTGACCAAAAAATGAGTTGTGAAAATGATAAGTTAGATGAATTTAGAATAGAGATAGCGGAGCCAGAAATCCTAGACCTTGACAGGAATGGCTCGATCAGACACAGAAGACAAGATGTTATTAGACCTATCAAGTTCCCATTAGAGAAAATAAACACAAACTCCAATTCAAGAAATTCTAACTTTCCAAGTGTTAGAGAATCGGCAAGGCTCACCAAGAAGAGAGTAACAATCCACTTACTACACAGCAGGAGTACCTCACGAGGTCAGCATGGAAAATTAATAATTCTGCCTGATTCATTAGAAGAACTGCTCAAAATTGCTGGTGACAAATTTGGTGGCTTCAACCCTACAAAAGTAAATAATACAGAGAATGCAGAGATAGATGACATAAATGTCATCCGAGATGGAGATCATCTCTTTCTTCTGTGCAGTGAAAATGAAGATGATGTTACGAAGATAGATGGCATCTTTAGGAACGTAATGACAACCATGTAA	2340	0.406	MSLSCARNFFQRFWQDEFQTGNIPHGSFLVNDDLLPSLGARMNQETRLRRYIISPFNPHYRAWELILVVLVIYSAWICPFEFAFLPCKEDALFIVDNIVNAFFAIDIVLTFFVAYLDHHSYLLVDHPKRIAIRYLSTWFAFDVCSTIPFQSFSFLFSHSSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIAERYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDSVKAASEFASRNHLPHRLQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPIVQKLYLFQGVSHDFLFQLVSEMEAEYFPPKEDVILQNESSTELHVLVSGAVVHGKAVAVDAFGEIGVLYHIPQPFTVRTTELSQILRLSKASLMNVLQANPGDAQIIMDNLLMRLKGREGFGFEYPCTDSGRFPHEVLQGGNTRGSPSHECTNNSQEHSLMHEGECIDITNSETSLRKVTNNGHLVTKHNMIPEHYRRDPHAPAHKGNLDIVEILLERDAYPKPNSIGWAQNALLKQPKNKSICDQKMSCENDKLDEFRIEIAEPEILDLDRNGSIRHRRQDVIRPIKFPLEKINTNSNSRNSNFPSVRESARLTKKRVTIHLLHSRSTSRGQHGKLIILPDSLEELLKIAGDKFGGFNPTKVNNTENAEIDDINVIRDGDHLFLLCSENEDDVTKIDGIFRNVMTTM	779

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g0356	779	ProSiteProfiles	KHA domain profile.	689	774	IPR021789	-
	Aed9g0356	779	SMART	cnmp_10	377	483	IPR000595	-
	Aed9g0356	779	Pfam	KHA, dimerisation domain of potassium ion channel	688	756	IPR021789	-
	Aed9g0356	779	ProSiteProfiles	cAMP/cGMP binding motif profile.	377	485	IPR000595	-
	Aed9g0356	779	Gene3D	-	61	300	-	-
	Aed9g0356	779	PANTHER	POTASSIUM CHANNEL AKT1	1	763	IPR045319	GO:0005249\|GO:0006813
	Aed9g0356	779	CDD	CAP_ED	377	479	IPR000595	-
	Aed9g0356	779	SUPERFAMILY	cAMP-binding domain-like	304	486	IPR018490	-
	Aed9g0356	779	Pfam	Ion transport protein	61	306	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Aed9g0356	779	Gene3D	Jelly Rolls	367	488	IPR014710	-
	Aed9g0356	779	SUPERFAMILY	Voltage-gated potassium channels	55	299	-	-
	Aed9g0356	779	PANTHER	INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT	1	763	-	-
	Aed9g0356	779	Gene3D	Helix hairpin bin	301	366	-	-
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	291	300	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	107	116	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	73	80	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	273	284	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	96	106	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Aed9g0356	779	PRINTS	EAG/ELK/ERG potassium channel family signature	247	264	IPR003938	GO:0005249\|GO:0006813\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g0356	Aed-Chr9	2466003	2469758	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g0356	687	756	Ion Channels	AT5G46240	57.143	8.40e-18	86.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g0356	K21867		-	gmx:100811356	1403.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed9g0356	9	2466003	2469758	Aed9g0356	9	2466003	2469758	ECH