Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0350 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGGCCGGGCCCGAAACCCAAACCGGGCTCGAAGAGCCTATGTGGCAATTGGGAATGGGTGCTGGGGAGGAATCGTATCCGCTACGCCCCGATGAGCTTGATTGCACGTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCGCGCTGTCGGTTCAACCATCCTCGTGATCGTACCACGGTTGTTGGACCTGAGAGGACTGCAGGGGAGTATCCCGAACGAGTAGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCATCTTGCAAGTACCATCACCCCAGGCAGGCAGGAGCTGCTGCTGCTGCTACCCCTGTATCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCAGTTCCTACTGGCGTCCAAATTCCACAACCATCACCAGTTGCTCCACTTTCGCCTATGCCTGTACCAGTACCTTCGCAGTTATATTCAACTATGCAGCCCCCACCCGGTCCTTCATCCCAGCAAATTGGTGTGCTAGTTGCGAGGCCTCCTATGCTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCCCCTGCCATGGTACCTATTTCTGGTTGGGGCCCTTATCAAGTAGGTCAAGCATTTCTTTTTGATTGCTCAGTCATATTATATGGGCATTCATTGAAGCTATTAACTATTGAGCTCTTCGTGCAGGCTTCTGCGGCAGGTGCTGTTCTTCCTTCTGGTACTCCATCTAATGTTGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAGCCTTCTGGTTCCCCAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCTGGAAAGGTCTAATCAACCAGAATATCAGTATTATCCGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCGGACATGAGTGCACCAAAAGCAAATCTGATTCTTAGTCCTGCAGGCCTTCCTTTGCGCCCGGGGGCACCAACTTGCACTCATTATGCACAACATGGAGCATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTGCTACTCTTGCTCCATCATCTTCATCTTCAGAGTTGCGGCCTGAACTTACCTCAGGATCCAGCAAGGAGTTTGTTCCACCCAGAATGTCTTCATCAATGTTGACTGGGTCAATTGGCTCGACTTTGTCAACTGGTGGACCCGATTCTCAATCAAGCACTCAACCACCTGCCCAAAGTTCAGGTCCTTTATCCACTGTCACTAGCACCACAAGTAGCAATGTCTCTCACACCTCAAGCTAA 1539 0.501 MEQYGRSSEGSRSDPSPEWAGPETQTGLEEPMWQLGMGAGEESYPLRPDELDCTYYLRTGFCGFGSRCRFNHPRDRTTVVGPERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGAAAAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPTGVQIPQPSPVAPLSPMPVPVPSQLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQVGQAFLFDCSVILYGHSLKLLTIELFVQASAAGAVLPSGTPSNVGSAQLYGITQLPSSAAAYPGPYQPSGSPVGPSSSSQKEQAFLERSNQPEYQYYPKTGEVKFGPSYRYNPPPDMSAPKANLILSPAGLPLRPGAPTCTHYAQHGACKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIATLAPSSSSSELRPELTSGSSKEFVPPRMSSSMLTGSIGSTLSTGGPDSQSSTQPPAQSSGPLSTVTSTTSSNVSHTSS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0350 512 MobiDBLite consensus disorder prediction 309 337 - -
Aed9g0350 512 MobiDBLite consensus disorder prediction 1 20 - -
Aed9g0350 512 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Aed9g0350 512 SUPERFAMILY CCCH zinc finger 51 76 IPR036855 GO:0046872
Aed9g0350 512 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Aed9g0350 512 MobiDBLite consensus disorder prediction 317 337 - -
Aed9g0350 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 74 IPR000571 GO:0046872
Aed9g0350 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Aed9g0350 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Aed9g0350 512 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 384 407 IPR000571 GO:0046872
Aed9g0350 512 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Aed9g0350 512 PANTHER PROTEIN PHOSPHATASE RELATED 1 249 - -
Aed9g0350 512 MobiDBLite consensus disorder prediction 437 512 - -
Aed9g0350 512 Gene3D - 49 127 - -
Aed9g0350 512 ProSiteProfiles Zinc finger C3H1-type profile. 380 408 IPR000571 GO:0046872
Aed9g0350 512 MobiDBLite consensus disorder prediction 1 26 - -
Aed9g0350 512 Gene3D - 128 176 - -
Aed9g0350 512 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Aed9g0350 512 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 274 503 - -
Aed9g0350 512 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 249 - -
Aed9g0350 512 PANTHER PROTEIN PHOSPHATASE RELATED 274 503 - -
Aed9g0350 512 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Aed9g0350 512 SUPERFAMILY CCCH zinc finger 384 410 IPR036855 GO:0046872
Aed9g0350 512 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Aed9g0350 512 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Aed9g0350 512 SMART c3hfinal6 49 74 IPR000571 GO:0046872
Aed9g0350 512 SMART c3hfinal6 380 407 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0350 Aed-Chr9 2405099 2410369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0350 1 456 C2H2 Transcription Factor Family AT5G18550 54.915 2.36e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed9g0350 zf-CCCH 1.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0350 - - gmx:100812433 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0350 9 2405099 2410369 Aed9g0350 9 2405099 2410369 ECH
Aed6g2399 6 25641215 25646514 Aed9g0350 9 2405099 2410369 PCT